Scophthalmus maximus (turbot): 118320040
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Entry
118320040 CDS
T09850
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau02010
ABC transporters
smau04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118320040 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118320040 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smau02000
]
118320040 (abca1b)
Transporters [BR:
smau02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
118320040 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
118320040
NCBI-ProteinID:
XP_035506709
LinkDB
All DBs
Position
9:complement(24156850..24181855)
Genome browser
AA seq
2306 aa
AA seq
DB search
MSLDLHFRTFVTSEFCLMSSTTMFPVVFQLQLLVEIVWPLFIFFILIAVRLNYPPYEQHE
CHFPNKAMPSAGTLPWIQGILCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDVKKIL
LYSQNDKNLDGFKDLAQALQLLQSSRSGFKLKHFLRDNETLSSFLLRNASVSEHGVQQIR
DADVNLEQVLLRGFGVHLRDMCPRKGGKRSLQDFVTISDQQVAMLVQEVLCQAPPAWLDL
AEHHFLDNLDFLKPIQRDVRSDPEAVRQVARATNNLLDSLGSLAVELARMKSWIDLRNEI
IFLTQNATSSPSTMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDESTY
DNSSTPYCNSLVKNMDSNPMSRMIWQALKPLLMGKILYTPHTPATQRVIHEVNRTFQELG
VFRDLGGMWEEMRPKVWSFMENSQQMDLIRTMLKNNVTAKFFRAQLSGSDWTVADVSNFL
SKQADDARPPGSAITWREVFNETDQAVMSISRFMECVNLDKLEPVSSEERLVNESMVLLE
DRKFWAGIVFPDVPPNATELPAKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRY
IWGGFSYLQDVIEQGIVRAVTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAW
MYSVAIILKSVVYEKEARLKETMRIMGLNNAILWFSWFISSLIPLLISAGLLVLLLKTGN
LLPYSDPGVVFLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQ
DYIGFGAKVFASLLSPVAFGFGCEYFALFEEQGVGIQWKNLVSSPLEEDDFSLRTSIVIM
YFDSFLYGVLTWYIEAVFPGQYGIPRPWFFPFTKSYWLGEKDGKSNKVHLSRKGNPGAVC
IEEEPTHLEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILT
GLFPPTSGTAYILGRDIRSELSIIRQSLGVCPQHNVLFSMLTVEEHIWFYSRLKGLSEQQ
VKGEIEQILQDTGLPHKRSSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYAR
RGIWDLLLQYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYL
TLVKKEPEPSLSSCRNSSSTVSFTKKYSVLQEEECASVSSSDAGLGSENESEAAPVDNGT
AASVCDVPFVGPDVSLVSSLILRHVPAARLVEDQGHELTYVLPYNAAKDGAFVALFKDLD
VKLPDLGISSYGVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPVRRRRRTHAFGGGDHQSC
LRPLTEDDDNEGNDSDGDPESRETDWLNCTDGKGSYQVGGWSLKKQQFVALIWKRFLFAR
RSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFISDDAPGDANM
QQLFNALLDAPGFGIRCMDGHPIPEAPCTMGDEDWHTPNISDSVQQLFSSGNWSMDDPSP
ACFCSCDGRKKMLPDCPAGAGGLPPPEMKLSATDTLQNLTGRNVSDYLVKTYAQIIGKSL
KNKVWVNEFRYGGFSLGARSTQVLPPANEIDDAIERVRKIFELQKGAAADRFLDSLSGFI
NGLDTKNNVKIWFNNKGWHSIGSFINVMNNGILRANLPRGLDPNKFGIRAFNHPLNLTKE
QLSQVALVTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWVA
NFIWDMCNYIVPATLVVLIFICFQQKAYVSSSNLPALALLLLLYGWSITPLMYPASFFFT
IPSTAYVVLTSVNILIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLID
MVKNQAMADALERFGENRLRSPLEWDMVGKNLFAMAVEGAVFFIITLLIQYRFFIKPSSV
SKLTKLGPLGEEDEDVARERQKIVHGLGHGDILELRQLTKVFKRKQKPAVDRLCVGIPPG
ECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINE
LLTGREHLELYAVLRGIPEGEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMSL
IGAPPVVFLDEPTTGMDPRARRALWNCIHSIIKEGRSVVLTSHSMEECEALCTRMAIMVN
GRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDLLPVMKFIESELSGSTLKEKHRNMLQYQ
LPSSLTSLAHIFSILAKNKDTLRIEDYSVTQTTLDQVFVNFAKDQSDDYHSKDNSVRRRD
VSIAVPVLSSAPGAAEGRGSQRESVM
NT seq
6921 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttgatcttcacttcaggacgtttgtgacctctgaattctgtctcatgtcatca
acaacaatgtttcctgtcgtgtttcagcttcagctcctggtggagatcgtctggccgctc
ttcatcttcttcatcctcatcgccgtgaggctcaactaccctccgtacgaacagcacgag
tgtcactttcccaacaaggcgatgccgtcggccgggacgctgccatggatccagggaatc
ctctgcaacgccaacaacccgtgtttcagacacccaacgccgggcgagtcgccgggcgtc
gtcggcaacttcaacgactccataatctctcgtctgttctcggacgtgaagaagattctt
ctgtacagtcagaacgacaagaacctggatgggttcaaagatctggctcaggcgctgcag
cttctgcagagcagccgatcaggattcaagttgaaacatttcctgcgagacaacgagact
ctgtcgagtttcctgctgagaaacgcgtccgtctccgaacacggcgtccaacagatcaga
gatgcagacgtcaacctggagcaggtcctcctaaggggtttcggggtccacctgagggac
atgtgtcccaggaaggggggcaagcgaagtctgcaggactttgtgacaatctcggaccag
caggtggcgatgctggtacaggaagtcctctgtcaggcgccgcccgcctggctggacctc
gctgaacaccacttcctggacaacctggacttcctcaaacccatccagagggacgtgagg
tccgaccccgaggccgtcagacaagttgccagggcgaccaacaacctcctggacagtctg
ggttcactggcagtcgagttggccagaatgaagagctggatcgacctgaggaacgagatc
atctttctgactcagaacgccacgtcgtcgcccagtaccatgtaccaggccgtgtccagg
atcgtgtgcggtcacccggagggcggtggcctgcagatcaaatccctcaactggtacgag
gacagcaactacaaggctctgttcggaaaccacaacagcagcgaggacgagtccacgtac
gacaactcctccactccgtactgtaacagtctggtgaagaacatggactccaacccgatg
tccaggatgatctggcaggctctgaagcctctgctgatggggaagatcctgtacaccccc
cacacccccgccacacagagggtcatccacgaggtgaaccggaccttccaggagctcggt
gtgttcagggacctgggaggaatgtgggaggagatgcgacccaaagtgtggagcttcatg
gagaacagccagcagatggacctgatcaggactatgctgaagaacaacgtcacggccaaa
ttcttccgcgctcaactgtccggcagcgactggaccgttgcagacgtgtccaacttcctg
tccaagcaggcggacgacgcccggccaccgggcagcgccatcacctggagggaggtgttc
aatgagactgaccaggccgtcatgagcatctcccgcttcatggagtgtgtgaacctggac
aaactggagccggtctccagcgaggagcgactggtcaacgagtccatggtgctgctggag
gacaggaagttctgggccggaatcgtgttcccggacgtcccgcccaacgccactgagctg
ccggccaaactcaactacaagatccgcatggacatcgacaacgtggagcggaccaataag
atcaaagacgcgtactgggacccaggtcctcgtgccgacccgtttgaggacatgcgctac
atctggggagggttctcgtacctgcaggacgttattgagcaaggcatcgtgagagcagtg
acgggaaccaaggagaaaaccggagtgtacatccagcagatgccgtacccttgctacgtg
gacgacattttcctgcgggtgatgagccgctccatgcctctcttcatgaccctggcctgg
atgtactcggtggcgatcatcctgaagagcgtggtgtacgagaaggaggcgaggctgaag
gagaccatgaggattatgggactgaacaacgccatcctgtggttcagctggttcatcagc
agcctgatacctctgctgatcagcgccggactgttggtgctgctgctcaagacggggaac
ctgctgccctacagtgaccccggtgtggtcttcctcttcctggggtcctttgcggtggtg
accatcatgcagtgcttcctcatcagcacggcgttcgctcgagcgaacctggcggccgcc
tgtggaggaatcatttacttcaccttgtacctgccctacgtgctctgcgtggcctggcag
gactacatcggctttggagccaaagtttttgccagcctcctgtctccggtggcgttcggg
tttggctgtgagtactttgctctgttcgaggagcagggagtcgggatccagtggaagaac
ctggtgtccagtcctctggaggaggacgacttcagcctgcgcacctccatcgtcatcatg
tactttgactccttcctgtacggagtcctcacctggtacatcgaggccgtgttcccaggt
cagtacgggatccctcggccctggttcttccctttcacaaagtcctactggttgggagaa
aaagacggaaagtccaacaaagtccatctcagccggaaaggaaacccaggagcggtgtgt
atcgaggaggagccgactcacctggaacctggcgtctacatcgagaacctggtgaaggtt
tatcgacacggtaagaaactggcagtggacggactgacgctcggcttctacgagggacaa
atcacctccttcctgggacacaacggagcggggaagaccaccacaatgtccatcctgacc
ggtctgttcccgcccacctcggggacggcctacatcctgggcagagacatccggtcggag
ctgagcatcatcagacagagtctgggagtctgtcctcagcacaacgtcctcttcagcatg
ctgaccgtggaggagcacatctggttctactctcggctcaaaggcctgtcggagcagcag
gtgaaaggtgagatcgagcagatcctgcaggacaccgggctgccgcacaaacgcagctcc
aggaccagcaccctgtctggcggcatgcagaggaaactgtctgtggctctggcctttgtt
ggtgggtcaaaggtcgtgatcctagacgaacccacggccggcgtcgacccctacgcccga
agagggatttgggatctactgctgcagtacagacagggtcggaccatcatcctgtcgacg
caccacatggacgaggccgacatcctgggagacagaatcgccatcatctcccacgggaag
ctgtgctgcgtgggctcgtctctttacctgaagaaccagctggggaccggctactacctg
acgctggtgaagaaggaaccagaaccgtcactcagctcctgcaggaactcgtccagcacc
gtgtctttcaccaagaagtactctgtgttgcaggaggaggagtgcgcctccgtcagcagc
agcgacgccggactcggcagtgagaatgaaagtgaggctgcgcccgtcgacaacggcacg
gcggcgtccgtctgtgacgtccccttcgtcggcccggacgtgtctctggtgtcgagtctg
atcctgcgtcacgtccccgccgcccgcctggtggaggaccagggacacgagctgacctac
gtgctgccgtacaacgctgccaaggacggagccttcgtggcgcttttcaaagacttggac
gtgaagctgcccgacctcggcatctccagctacggcgtgtcggacacgacgctggaggag
attttcctgaaagtcgctgaagataacggagtcgacactgaagtgccgtcagacggcaca
cttcctgtacggaggcggaggaggactcacgcctttggtggaggagaccaccagagctgc
ctgagacctttaacagaggatgacgacaacgagggcaacgactctgacggagaccctgag
agcagggagacggactggttgaactgtaccgatggtaaaggctcgtaccaggtgggaggc
tggagtctgaagaagcagcagttcgtggctctgatatggaaaagattcctgttcgcccga
cgctccaggaaaggcttcttcgcacagatcgttcttcctgctgtgtttgtctgcatcgct
ctggtcttcagtctcattgtccccccgtttggaaagtatcccagtctggagctgcagcct
tggatgtacgaggaccaggtcaccttcatcagtgacgacgctcctggagacgccaacatg
cagcagttatttaacgctcttctggacgctccgggcttcgggattcgctgcatggacgga
catcccatcccagaggctccctgtacgatgggcgacgaggactggcacacccccaacatc
tctgacagcgtccagcagctgttcagctctgggaactggagcatggatgatccttctccc
gcctgtttctgcagctgcgacggcagaaagaaaatgctgcccgactgtcctgctggcgcc
ggaggtctgcctccacctgagatgaagctgagcgccaccgacactctgcagaacctgacg
ggaagaaacgtctccgactacctggtgaaaacctatgctcagatcatcggcaagagcttg
aagaacaaagtctgggtaaatgagttcaggtatggaggcttctcattgggcgccaggagc
actcaggtcctcccaccagccaatgagatcgacgacgccatcgaacgagtcagaaagatc
tttgagttacagaagggagcagcagctgatcgattccttgacagtttgtcaggtttcatc
aacggtttggacacaaagaacaacgtgaagatctggttcaataacaaaggctggcacagc
atcggatcttttatcaacgtgatgaacaacggaatcctgagagcgaacctgccccgagga
ctcgaccccaacaagtttggtatcagggccttcaaccatcctctgaacctgaccaaggag
cagctgtcccaggtcgcactggtgacaacctccgtggacgtcctggtgtccatctgtgtg
atctttgccatgtccttcgtcccggcgagcttcgtggtcttcctcatccaggagagagtc
agtaaagccaaacacatgcagttcatcagtggcgtccagccgctgctctactgggtggcc
aacttcatctgggacatgtgtaactacatcgtcccggcgacgctggtcgtcctcatcttc
atctgtttccaacaaaaagcctacgtgtcgtcctccaacctcccggccctcgccctgctg
ctgctgctctacggctggtcaatcacgccgctcatgtatcccgcctccttcttcttcacg
ataccgagtacggcgtacgtcgtactcaccagcgtcaacatcctcatcggcattaacggc
agcatctccaccttcgtcatggagctgtttggaaacaacgagattggaggaattaacgac
atcctgaagaacgtcctcctcatcttccctcacttctgtctgggtcgaggtctcatcgac
atggtgaagaaccaggcgatggccgacgccctcgagagattcggtgagaacagactccgc
tctcctcttgagtgggacatggttggaaaaaacctgttcgccatggctgtggagggagcg
gtcttcttcatcatcaccctcctcatccagtacaggttcttcataaagcccagctcagtc
agtaaactcaccaaactgggtccactgggtgaggaggacgaggacgtggcccgagagaga
cagaagatcgtccacggcctcggacacggagacatcttggagcttcgacagctcaccaag
gtgtttaagaggaagcagaagccggcggtggatcgactgtgtgtcgggattcctcctgga
gagtgtttcggcctcctcggcgtgaatggagctgggaagacaacgacgtttaagatgctg
acaggagacacgctggtgaccagcggagaggctttcctggccgggaagagtatcctgagg
gagatcgatgaggtccatcagaacatgggctactgtcctcagtttgacgccatcaacgag
ctgctgacaggtagagaacatctggagctgtatgccgtcttgcgaggcatccccgagggg
gaagtgtgtgacgtggcggagtgggggatcaggaagttgggtctggtgaagtacgccgac
aaggcagcaggaagttacagtggaggaaacatgaggaaactgtcgactgccatgtcgctg
atcggagcgccgcctgtcgtcttcctggacgagcccaccactggcatggacccccgagcc
cgccgggcgctctggaattgcatccacagcatcatcaaggagggacgctccgtggtcctc
acctcgcacagtatggaggagtgtgaggctctgtgtaccaggatggccatcatggtgaat
ggcaggttccgatgtctcggcagtgtccaacatttgaagaacaggttcggtgacggctac
accatcatcctgcgggtggcggggccggaccccgacctgttgcccgtcatgaagttcatc
gagagcgagctgagcggcagcacgctgaaggagaaacatcgcaacatgcttcagtatcag
ctgccttcgtcactcacctcgctcgctcacatcttttccatcctcgccaagaacaaagac
acgctgaggatcgaggactactccgtcacccagaccaccctggatcaggtgttcgtgaac
tttgcgaaggaccagagcgacgactatcactccaaagacaactcagtgagacggagagac
gtgtccattgcggtcccggtgctgagctccgcccccggtgccgcggaggggcggggctcc
caaagggagagcgtcatgtga
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integrated database retrieval system
