Scophthalmus maximus (turbot): 118320327
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Entry
118320327 CDS
T09850
Symbol
lmo7a
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
118320327 (lmo7a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smau04121
]
118320327 (lmo7a)
Ubiquitin system [BR:
smau04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
118320327 (lmo7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
118320327
NCBI-ProteinID:
XP_035506821
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All DBs
Position
14:6263126..6309532
Genome browser
AA seq
1559 aa
AA seq
DB search
MEWREQSAVGCDEAYLEAQRWIEAVTKKNFGSSDFRSALENGVLLCDLINKIRPGIIKRV
NRLPTPIAGLDNLNVFLRACGKLGLKDAQLFHPGDLQDLSTRVTVKHQETDRRLKNVLIT
VFWLGRRAQGDTFYDGPYLNFKAFEGLLGTALYKALQDTSGHTGSNVRDSGFGDSWYSER
EEIYQLRGGGGGGGGGGRGNSNSNSNSNSNSSSGGGGGHRRDDSLDSLDSLGSRPQSISS
EATLKGSSEGCCSDTEADSVFRMAENKDGLSYRRSVVITPKASTPFNQFLPTKDKPSAYV
PAPLRKKRAERNEDNRRSWANPIYTEEDGTLTREHPMQESIDGSKSTSDIQAEPAAMRQV
RYEELQKVREQIKESDDQWQNDLSKWKNRRRSVNSDIVKKKEEREKIEQITASTDRRSKT
FKEMQEQRESKGKKSIGNRFGSLSLLDDEEDVFEQPVIAPRTRALPARSYTIDTPYHSSE
PSLREVEPPAASPATVRAASPPTSREVKSVDRPAGSDTTTTVTPIPQSRSSTHRSRSPAG
APLQRSPVSERTRAAKTEETTTTVSSSSSRQQVPVPEPRRPLSGTQTAVDAPSSGFLYKQ
QPQRRSMEPKPPAVSQVSASLPRSYQRSDSARITSVVTPRPFGTQSSRITSLPRVFAMDD
SHKRVNGNVDASKKSSVPTRYQQFMTPEEEDESSSAHSSEDEEEEEEEEWKKTAPKSVSL
AQSSLPVPAPVKSEGPVSPAPTKESSQENYCEMRISLNQKPNSSRDFGFQAAWDSTGARV
TSIQPGSSAAMCQLQAGDEVLTVNRHQVAKMSYTDWKSCMEEALQEGSLVMDIRRHGKNM
PLHRLHADWDRDPPSLPFKSHKTINLTSTDHPILLGSTDALTANSSLDFTSRASAETLLP
KEVAANPVVDLASNRVNGSFHEKSVTMRNKESEPMSLKNLKRRSEFFEKGGSGSRVSALV
YLCGGSEAAMPDIPVPPITPSSRWSWDPEEERRRQEKWQKEQERLLQEKYKRGQEKLQEE
WQKAQEEIANSVDQRDGAKPWSLDGNSHSLMPHSPVFPVNQPTSSLWEEEERKRKEEQEI
ERRRQAVEEQERQRQVAEEQERQRQVAEEQERQRQAAEEQERQRQVAEEQERQRQAAEER
RRREEEERELQRLQEERKRREMQEAEVRRMREEEELRWQRRKEEERAVEEERRRQQAAAE
QQRQERERAFRLQHQQQQQQWAAGSHDFTNVQPPLSLADRAKSKSSPQLDEDEKPQRRGV
HVQPGGMAHWLLEEQLRSVRDRQAQSQRAASELEMERRNILNAMRYREPERVSGSGADER
KGQQSPSLAELERQQILNEMKKKTPLLTDSSWIRQRDANMAANKDSDVPPMRRGESLDHL
DASYNSWRSSWTPRSNTYSQNYTRPHSALSGSAAHYGGGPAAQRPASSTLPSSYSMGSLR
GGAGTPSSPWSRQTPSPSPSSPSPADSPEPTSEPDALKQRSRSVSGKKICTFCDTPLGKG
AAMIIESLGLCYHLGCFKCIDCKSDLGGSEIGAEVRIRNKQLYCNSCYMRFKIGQPTAM
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgcgagcagtccgcggtcggctgcgacgaagcctacttggaggcgcagaga
tggattgaggcagtaaccaagaaaaacttcgggagcagcgacttccgatcagcactggag
aatggcgttctgctgtgcgatctaatcaacaagatcaggcctggcatcatcaagagggtt
aacaggctgcccacacctattgctggactggacaacctcaacgtcttcctcagggcctgc
gggaagctcggactaaaagacgcgcagctctttcaccccggggatcttcaggacttgtcc
acaagagttacagtcaagcaccaggagaccgacaggaggctgaaaaatgtgctgatcacc
gttttctggcttggcaggagagctcagggcgacaccttctacgatggaccctacctgaac
ttcaaggcgttcgagggattactaggcacagcactgtacaaggctctgcaggacacgtcc
ggtcacacaggcagcaacgtcagggacagcggtttcggggatagctggtactcggagcga
gaggagatctaccaactgagaggaggaggaggaggaggaggaggaggaggacgcggcaac
agcaacagcaacagcaacagcaacagcaacagcagcagcggcggcggcggcggacacaga
agagacgactccctggacagtttggactctttgggctcccgacctcagagcatctcctcc
gaggctacacttaaaggaagcagcgagggttgttgcagcgacaccgaggccgactctgtc
ttcaggatggccgagaacaaggacggcctcagttaccgccggtcggtcgtcatcacaccc
aaggccagcacgccgttcaaccagtttctgcccaccaaggacaagccgtcggcttacgtg
cctgcgccgctgaggaagaaacgggccgaacgcaacgaggacaaccggcgcagctgggcc
aaccccatatacacagaggaggacggcacactcaccagagagcacccaatgcaagagagt
atcgacgggagtaaatcaacgagtgacatccaggccgaacctgccgccatgaggcaggtt
cgctacgaagagctgcagaaggtccgtgagcagataaaggagagtgatgatcagtggcag
aatgacctgagcaaatggaagaaccggcgcaggagtgtcaactctgacatcgtgaagaag
aaagaggagcgcgagaagatagagcagatcaccgccagcaccgacaggaggtccaagacc
ttcaaggaaatgcaagagcagagagaaagtaaaggaaagaaaagcatcggcaatcgtttt
ggatctctctctctcttggatgacgaggaggacgtatttgagcaacccgtcattgcccct
cgtacccgggcccttcctgccaggagctacactattgacactccttaccattcctctgag
ccctccctgagagaggtcgaaccccccgctgcttccccagcgaccgtcagggccgcttcc
cctcccacctcacgggaagttaaaagtgtggaccgtcctgcgggcagcgacaccacgacc
accgtcactcccattccccagagccgcagctctacccaccgctcccggtctcctgcgggt
gcaccactgcaaaggagtccggtctcggagcgcaccagagcggccaagacagaggagact
acgaccaccgtctcctcttccagctcccgacaacaggtgccggtgccagagccgaggcgc
ccattgtcgggcacgcagaccgcggtggacgccccctcctccggttttctgtacaagcaa
caaccgcagcgccgctcgatggaacccaaacctcccgcggtgtctcaggtttccgcctcc
ctccccaggagctaccagagatcggatagcgcccgtataacctcagttgtcacgccaagg
cccttcgggacccagtcctcccgcatcacctccctcccgcgagtcttcgcaatggacgac
tctcacaagcgtgtcaacggcaacgtggacgcatccaaaaagtcgtcggtgccgacccgc
tatcagcagttcatgacccccgaggaagaggatgagtccagctcggcccacagcagtgaa
gatgaggaggaagaggaggaggaggagtggaagaagacagcgccgaagagcgtcagcttg
gctcagagctccttgcctgtccctgctccggtcaagagcgaaggtcccgtcagccctgct
ccgaccaaagaaagcagccaggagaactactgcgagatgcggatcagcctgaaccagaag
cccaacagcagcagagacttcggcttccaggctgcctgggactcaactggcgctcgcgtc
acgtccatccagccaggcagctcggctgcgatgtgccagctccaggccggagacgaggtg
ctgacggtgaacaggcaccaggtggcaaaaatgagctacacggactggaagtcctgcatg
gaggaggccctgcaggagggcagcctggtcatggacattcgccgtcatggcaagaacatg
ccgttgcatcgtctgcatgcagactgggacagagatccaccttccctgccatttaaaagc
cataagaccatcaatctgaccagtacggatcatccgatacttctaggttccacggacgca
ctcaccgcaaactccagcctggacttcacgtcgcgcgcttccgcggaaacgctgctgccc
aaggaggtcgccgccaacccagtcgtcgatttggcttcaaacagagttaatggaagtttc
catgagaagtcagtgaccatgaggaacaaagagtcagaacccatgtctttgaaaaactta
aaacggaggtcagagttttttgaaaaaggcggctcagggtcccgtgtcagtgcgctggtc
tacctctgtggaggatccgaggctgcgatgccagatatacctgttcctccaatcacgccc
tccagccgctggtcttgggatccggaagaggagcgcaggagacaggaaaaatggcagaag
gaacaggagcgcctcctccaggagaaatataagcggggccaggagaaattgcaggaggag
tggcagaaggcccaggaggagatcgccaacagcgtggaccaacgagatggagcgaagccc
tggagcctggacgggaacagccacagcctcatgccacactcgccagtctttccagtcaac
cagccgacttcttctctgtgggaagaggaagagagaaagaggaaggaggagcaggagatc
gagcgccgaaggcaggcggtggaggagcaggagcgccagaggcaggtagcagaggagcag
gagcgccagaggcaggtggcggaggagcaggagcgccagaggcaggcggcggaggagcag
gagcgccagaggcaggtagcagaggagcaggagcgccagaggcaggcggcggaggagcgg
aggaggcgggaggaggaggagcgagagctgcagcgtctgcaggaggagagaaagaggaga
gagatgcaagaggcggaagtgaggaggatgagggaggaggaggagctgaggtggcagagg
aggaaggaggaggagagggcggtggaggaggagaggaggcggcagcaggcagcggcggag
cagcagcgccaagagcgggagagagccttccggctgcagcatcagcagcagcagcagcag
tgggctgctggctcccacgactttaccaatgtgcagccgccactgtccttggcagacagg
gcaaaatctaaatcatctccccagcttgatgaagacgaaaaacctcagaggagaggagtg
catgtgcagccggggggcatggctcactggctgctggaggagcagttgaggagtgtgcgt
gacaggcaggcccagagtcagagggccgcgtcagagctggagatggagaggaggaacatc
ctcaatgccatgagatacagagagccagagagagtgtcgggcagtggagcggacgagagg
aagggtcagcagtccccgtcgctggccgagctggagcggcagcagatcctgaacgagatg
aagaagaaaacgccgctgctgacggacagcagctggattcgccagcgcgacgccaacatg
gccgccaacaaggacagcgacgtgccacccatgcgcagaggcgagtctcttgaccacctg
gatgcctcctacaactcctggcgctcctcgtggactcccagaagcaacacttacagccaa
aactacacccggcctcactctgccctctccggcagcgctgcccattacggtggcggacct
gcggcccagcggcccgcttcctccaccctgccctcctcctactccatgggctccctccga
ggcggggcaggaaccccctcgtcgccctggtcccggcagacgccttccccctcaccctcg
tccccgtcacccgccgactccccagagcccacgagtgagccggacgccctcaagcagcgg
agcaggtcagtgagtggcaagaaaatctgtacgttctgtgacaccccgctgggaaaggga
gcggccatgatcatcgagtcccttgggctctgttatcatttgggctgttttaagtgcatc
gactgcaagtctgacctcggaggatcggaaatcggcgccgaagtcagaatacgaaacaaa
cagctctactgtaactcctgctacatgcgattcaaaattggccagccaaccgccatgtga
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integrated database retrieval system
