Scophthalmus maximus (turbot): 118320370
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Entry
118320370 CDS
T09850
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118320370 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smau03041
]
118320370 (sf3b1)
03036 Chromosome and associated proteins [BR:
smau03036
]
118320370 (sf3b1)
Spliceosome [BR:
smau03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118320370 (sf3b1)
Complex B
118320370 (sf3b1)
Complex C
U2 SnRNP specific factors
118320370 (sf3b1)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
118320370 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
118320370
NCBI-ProteinID:
XP_035506953
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All DBs
Position
14:1344277..1357530
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AA seq
1321 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLVEEGAEQGVGLVSTGFFDQEIYGGSDSRFAGYVTS
IAANEQEEDDEEDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDE
YKSRRRQMIISPERLDPFADGGKTPDPKMQVRSYVDVMLEQNLSKEEREIRLQLAEKAKS
GDLKVVNGSAAAQAAAAAAATKRKRRWDQTADQQTPSNTTPKKMSSWDQADTSGETPGHT
PGHTPSNSRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGG
ATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPA
SQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEE
LDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGN
LPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKA
REFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI
DEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPS
LLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRT
ISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYAN
YYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRM
ALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAAD
IDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNK
SAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV
IGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELL
ELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETC
SPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLV
HRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGP
CRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVFVRCELEYV
L
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagacatcgaggcccagatcctggagatccagggg
atgaaggcctcgctggtggaggagggggcggagcagggagtgggcctcgtctccactggc
ttctttgaccaggagatctatggaggcagcgacagccgctttgctggttatgtcacttcc
atcgctgccaacgagcaggaggaggacgatgaagaggacacgtcgacgagcctgttggga
cagaagaagcctgggtaccacgcaccggtggccatactcaacgccattcctcagtcagat
gagcaatacgacccgtttgccgaacatcgtccgcagaagatcgcagagcgtgaggacgag
tacaaatcccggcgcagacagatgatcatctcgccggagcgtctcgacccttttgcagac
gggggcaaaacgccggaccccaagatgcaggtcaggtcgtacgtggacgtcatgttggag
cagaacttgtccaaagaggagagagagattcgcctgcagctggcagagaaggcaaaatcg
ggggacttgaaagttgtcaacgggtccgccgccgcccaggctgccgccgctgctgccgcc
acaaagcgcaagcgtcgctgggatcagacggccgaccaacaaaccccttctaacaccacg
cccaaaaagatgtccagctgggaccaggctgacactagtggcgagactccaggacacacc
cccggacacacaccctccaacagccgatgggacgagacccccggccgccccaaaggcagc
gagacccccggggccactcccagcacacgcatgtgggaccccacccccagccacacgccc
gccggcgctgctacccccggcagggacacgcccggccacgccacgccaggccacggtgga
gccacgggcagcgtgcgcaagaaccgctgggacgaaaccccaaagacggagagagagacc
ccaggacacggcagtggatgggcggagaccccccgcacagacagaggggacgagtctgtc
ggtgagaccccgaccccgggggccagtaagaggaagtctcggtgggatgaaactccggcc
agtcagatgggatcctcaacaccgctgctcacccccgggaagactcccattggaacacca
gccatgaacatggcgacaccaacaccaggtcacctgatgagcatgaccccagagcagctg
caggcctggaggtgggagagggagatcgatgaaagaaaccggcctctcactgacgaggag
ctcgacgccatgtttccagagggatacaaggtcttgcctccaccggcgggctatgtgccg
atccgcacgccggcccggaagctgtcggccacgcccactcccatcggaggcatgacaggt
ttccacatgcaggtggaggatcgcaccaccaagcagatgaacgaccagccctcaggaaac
ctgcccttcctcaaacccgacgacatccagtattttgacaaactgctggtggaggtggac
gaatccacgctgagcccagaggagcaaaaggaaaggaagatcatgaagctgctgctgaaa
attaaaaatggaacaccccccatgaggaaggccgccctgcgtcagatcacggacaaggct
cgtgagttcggagcgggtcctctcttcaaccagatcctgccgctgctcatgtcgccaaca
ctggaggaccaggagcgccacctgctggtcaaagttatagaccgcatcctctacaaactg
gacgacctggtccggccgtacgtgcacaagatcctagtggtgatcgagccactgctgatc
gatgaagactactacgccagagtggaaggcagagagatcatctccaacttggcaaaggcc
gccggtctggcaacgatgatctccacgatgcgacccgacatcgacaacatggacgagtac
gtcaggaacacgacggcccgcgccttcgccgtggtggcgtccgccctgggcatcccctcg
ctgctgcccttcctcaaggccgtgtgcaagagcaagaagtcgtggcaggcgcggcacaca
ggcatcaagattgtgcagcagatcgccatcctcatgggctgcgccattctgccccacctc
cgcagcctggtggagatcattgagcacggtctggtggatgagcagcagaaggtgaggacc
atcagcgctctggccatcgccgctctggccgaagccgccacaccgtacggtatcgagtcg
ttcgactcggtgctcaagccgctgtggaagggaatcaggcagcacagaggaaagggtctg
gccgctttcctcaaagccatcggttacctgataccgctgatggacgccgagtacgcaaac
tactacaccagggaggtgatgttgatcctcatccgagagttccagtcccccgacgaggag
atgaagaagattgtgctcaaggtggtgaagcagtgttgtggcactgacggtgtcgaagca
aactacatcaagacggagatcctgcctccgttcttcaaacacttctggcagcacaggatg
gctctggacagacgcaactacagacagcttgttgacaccacggtggagttggccaacaaa
gtgggagcggccgagatcatctcgcgcatcgtggacgacctgaaggatgaggcggagcag
tacaggaagatggtgatggagaccatcgagaagatcatgggcaacctgggcgccgccgac
atcgaccacaagctggaggagcagctgatcgacggcatcctgtacgccttccaagagcag
accacagaggactctgtgatgctgaacgggttcggcacggtcgtgaacgccctggggaag
cgcgtgaagccctacctgcctcagatctgcggtacggtgctgtggcgtctcaacaacaag
tcggccaaagtccgtcagcaggcggctgacctcatctcccgcacggctgtggtcatgaag
acctgccaggaggagaagctgatgggtcacttgggtgtggtgctgtacgagtacctgggg
gaggagtatcccgaggtgctgggcagcatcctgggagcgctgaaggccatcgtcaacgtc
atcggaatgcacaagatgactcctccgatcaaagacctgcttcctcgtctgacgcccatc
ctgaagaacagacatgagaaggtgcaggagaactgcatcgacctggtgggaaggatcgcc
gacaggggagctgagtacgtgtcggccagagagtggatgaggatctgcttcgagctgctg
gagctgctgaaggctcacaagaaggccatccgccgagccaccgtcaacacctttggctac
atcgccaaggccatcgggcctcacgacgtgttggcgacgctgctcaacaacctgaaggtg
caggagcgtcagaatcgcgtctgcaccaccgtggccatcgccatcgtggccgagacctgc
tcgccgttcaccgtgctgccggcgctcatgaacgagtaccgcgtgcccgagctcaacgtg
cagaacggcgtgctcaagtcgctctccttcctgttcgagtacatcggagagatgggcaag
gactacatatacgccgtcacgccgctgctggaggacgcgctcatggaccgagacctggtc
caccgacagacggcgagcgccgtggtgcagcacatgtcgctgggcgtctacggcttcggc
tgcgaagactcgctcaaccacctgctgaactacgtgtggcccaacgtgtttgagacgtcg
ccccacgtgatccaggccgtcatgggcgccctggaggggctgcgagtcgccatcgggccc
tgccgcatgctgcagtactgcctacagggtttgttccatccggcccggaaggtgcgagat
gtctactggaagatctacaactcgatatacatcggctctcaggacgcgctcatcgctcac
tacccacaagtctacaacgacgagaagaacgtgttcgtccgctgcgagctcgagtacgtc
ctgtaa
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