Scophthalmus maximus (turbot): 118320423
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Entry
118320423 CDS
T09850
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X3
KO
K16474
intraflagellar transport protein 88
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
smau03037
]
118320423 (ift88)
Cilium and associated proteins [BR:
smau03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
118320423 (ift88)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_6
TPR_14
TPR_7
TPR_16
ANAPC3
TPR_11
TPR_17
TPR_9
TPR_10
ARM_TT21_5th
TPR_CcmH_CycH
TPR-S
ARM_TT21_C
Coatomer_E
HAT_PRP39_C
SHPRH_helical-1st
TPR_15
NatA_aux_su
Consortin_N
ARM_TT21_2nd
HECW_N
FumaraseC_C
Motif
Other DBs
NCBI-GeneID:
118320423
NCBI-ProteinID:
XP_035507120
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Position
14:complement(3519855..3540427)
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AA seq
790 aa
AA seq
DB search
MSLLRLSGQGEMENVHLALEEDDLYSGYNDYNPTFDSDALENDVGFQQAVRTSHGRRPPM
TAKFPGTAIGARPLASSFGSRIPLTSSMGRPMTGAVQDGAARPMTAVRAAGYTSSMTRGS
TFDPLGQSKGPAPPLETKNEDTPEEKIKSLEKKVNDLIEESCMAQSMGTLLLALEKAKEA
GRKERALVRQRQQSGYADQINLDLTYSVLLNLANQYANNDMYPEALNSYQVIVKNKMFNN
AGRLKVNMANIYFKQKNYPKAIKFYRMALDQISNAHKGMRIKILQNIGVVFIRMGQYSDA
ITSFEHIMSESPNVKTGFNLILCYYAISVKERMKTAFQKLISVPLGIDDEDKYIPTNDDA
SSNMVIEAIKNDKLHQMERDLKALAEKYIMTAAKLIAPAIENSFATGFDWCVDTLKSSQY
VELANDLEINKAITYIRQKDFNQAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDFDQAD
RYADLAMTADRYNPAALINKGSTVFVKQDYEKAAEFYKEALRNDSSCTEALYNLGLSYKK
LNRLEEALDCFLKLHAILRNSAQVMYQLANLYELLEDPQQAIEWLMQVISVIPTDPQTLA
KLGELHDGEGDKSQAFHYYDESFRYFPSNIDVIEWLGAYYIETQFCENAIQYFERATHIQ
PTQVKWQLMVASCYRRSGNYQRALETYKDIHRKFPENVECLRFLVRLCTDMGLKEVQDYA
TKLKKVEKMKEIREQRVKSGREGSARGRREGREGSAGSAAFVSSKSSPVICTMMTTCAVT
VQPKVFFKER
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgctccgcctctccggacaaggggagatggagaacgtgcacctcgcgctggag
gaggacgatctgtactcgggctacaacgactataatcccacgtttgactcggatgcgttg
gagaatgatgtgggcttccagcaagcagtcaggacaagtcatggaagacgacccccgatg
acggccaagtttcccggcactgccattggagctcggcctttagcttcttcttttggatct
cggatccctctgacgtcttcgatgggccgacccatgactggagctgtgcaggatggagcc
gcccgaccaatgactgctgtcagagccgcaggttacacctcctccatgacccgtggctca
acttttgaccctctgggtcagtccaaaggccccgcccctccacttgaaacaaagaacgag
gacacgcccgaggagaagatcaagagcctggagaagaaagtgaacgacctgatagaagag
agctgcatggcacagagcatgggaaccttactgctggctcttgagaaagccaaagaggca
gggaggaaggagagagcactggtgagacagaggcaacagtctggctacgcggaccagatc
aatttagacctcacctactcggttttgctcaaccttgccaaccagtacgcgaacaacgac
atgtacccagaggccctgaacagctaccaggtcattgtgaagaacaagatgttcaacaat
gcaggcagactgaaagtcaacatggccaacatctacttcaaacagaaaaactaccccaag
gcaattaagttctaccgcatggcactggatcagatctccaatgcacacaagggaatgcgg
atcaagatcctgcagaacatcggcgtggtcttcatccgcatgggccagtactcggacgcc
atcacatcctttgagcacatcatgagcgagagccccaacgtcaagacgggcttcaatctc
atcctgtgctactacgccatcagcgtcaaggagaggatgaagacggcctttcagaagctc
atttcggtccctctgggcatcgacgatgaagacaagtacattccgacaaatgacgacgcc
agttccaacatggtcatcgaggccattaagaacgacaagcttcaccagatggaaagagat
ctaaaagcactggcggagaagtacatcatgacagcagccaagctcatcgctccggccatc
gagaattcctttgctactggatttgactggtgtgtggacacgttgaagagttctcagtat
gttgagctcgccaacgacctggagatcaacaaggccatcacctatatccgacagaaggac
ttcaaccaggcagttgaaaccctgaaaacatttgagaagaaggacagcagagtgaagagc
gctgcagccaccaacctctctttcctttacttcctggagaaggactttgaccaggcggac
cgctacgctgatctcgccatgaccgccgatcgctacaacccagcggcactcatcaacaag
ggcagcaccgtgttcgtcaaacaggactacgaaaaggccgcagagttctacaaagaagca
ctgaggaacgattcctcctgcaccgaggccctctacaacctgggtctgtcatataagaaa
ctgaatcgtctggaggaggctctggactgcttcctgaagctccacgccattctgaggaac
agtgcccaggtcatgtaccaactggccaacctctacgagcttctggaggatcctcaacag
gcgatcgagtggttgatgcaggtcatcagcgtaattcccaccgacccccagacactggcc
aagctgggggagctgcatgacggcgagggggacaagtcccaggctttccactactacgac
gagtccttcaggtacttcccctccaacatcgacgtgatcgaatggctcggggcgtattac
atcgagactcagttctgtgaaaacgccattcagtactttgagagagcgacacacatacaa
ccaacacaggtgaagtggcagctaatggtggcgagctgctacagaagaagtggaaactac
cagagagctctggaaacctataaagacatccatcgcaagtttccagaaaatgtggaatgt
ctgcgcttcttggtgaggctgtgcacggacatgggactgaaggaagtccaggactacgcc
accaagctgaagaaggtggagaagatgaaggagatcagggagcagagggtgaagtcggga
cgggagggcagcgccagaggtcggagggaaggcagagagggcagcgccgggagtgcggct
ttcgtctccagtaaatcttcaccagtcatttgcacgatgatgacgacatgtgcggttacc
gtgcagccgaaagttttttttaaggagcgctga
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