Scophthalmus maximus (turbot): 118320632
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Entry
118320632 CDS
T09850
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03015
mRNA surveillance pathway
smau04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118320632 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118320632 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118320632 (sympk)
03019 Messenger RNA biogenesis [BR:
smau03019
]
118320632 (sympk)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118320632 (sympk)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118320632 (sympk)
U7-dependent histone pre-mRNA processing factors
118320632 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
118320632
NCBI-ProteinID:
XP_035507527
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All DBs
Position
14:22547332..22559816
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AA seq
1228 aa
AA seq
DB search
MDLSPEDGGTSRVIDMTTSEKVVDLLNQAALIPTDEKLAVLKQVQELIINKDPSLLDNFL
DEMIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKAILTLT
QLYRVTLQWLVRPKAVSDMQEACWDLVTQMKGDVLASLDSENDGVRTHAIKFTESLIITL
SPRTSDSDIPKRQEGDISLDKVPKDHSYIRYDVLCEEGKSALEKLLKFMVHPAISSINLT
TALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPCS
LEFQGQISTLLLDLGMPQSEITRSTPAVREQRKRPRHEQYTEGKKVKMDPIEDDEDKEEP
APLTAPKPAAVPVAQSAIDLTAEFLHPLLNPENVANLVLISMVYLPDVMPASFQATYTPV
ESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDDAIKEEDNDEDSGSKDLLIKRKV
PGVMVGQAISVVGGYTEKVPAVEAPATVKRLPEPIVPTAQTKMTGASGRKKVFRLSDVIQ
PFSDTQIEKLTSRAVKRILHSEKAIAQSGMSHVRVKLLSRLVTQFEGMMKEDVLEFILDD
IRTRSDLAFSLLYQEYNAYLSQLPSGLLDSYDHCLYTLLSGLQEKPEQRDGLFTKLVLEA
PIITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVRTT
ALAFLKRMYEKDQLRDYIEKFGLNYLQLLVHPNPPSLLFGADKDTEVASPWTEETVRQCL
FLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKG
AETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPKLI
KLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLCFG
ERNVYTSEVLAVVMQQLMENSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVWKY
PKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMREPLLLHVHSFTPNQQAHIS
ASTMAVLEANKKPALKPAEPVLEKEMEPLTAPAASVSEMAPTATLTEAETPEQHDLAVTK
DEEPMEQEHLDPVIQEESVHAVSQVELTRKAETPSPQPEPEPEPEEPMEASEPEPEPEPE
PSDLQEPERDVEAEVTGTEAGSSSEEVE
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggatctttctcccgaggacggggggacctcccgtgtcatcgatatgaccaccagtgaa
aaggtggtggatctactgaatcaggctgcgttgataccaacagatgagaagcttgctgtg
ctcaaacaggtccaggagcttatcatcaacaaggatccctctcttcttgacaatttcttg
gatgagatgatcgcttttcagactgacaagtctatcgaagtgagaaagtttgtcatcggc
ttcatagaggaagcatgtaaaagggacaacgagctcctcctcagactgattgccaacctg
aacatgttgctgaaggatgaaagtgtgaatgtggtgaagaaagccatcctcacgctcaca
cagctgtacagagtgactctgcagtggctggtgcgccccaaagcggtatccgacatgcag
gaggcgtgctgggatttggtcactcagatgaagggggatgttctggcctcgctggattct
gaaaatgacggcgtgcgcactcatgcaatcaagttcacagagtcgctgattatcactctg
tccccacggacttcagattctgacatccccaaacgacaggagggcgacatcagcctggac
aaagtccccaaagatcactcgtacattcgatatgatgtcttgtgtgaggagggaaaatct
gcactggagaagctgctgaagttcatggtccacccggccatttccagcatcaacctcacc
acagcactgggctcactggctaccatcgcacgtcagaggcctatgttcatgtcagaggtg
gtgcaggcgtacgagacactgcatgcaaacctgccgcccactctggccaagtctcaggtc
agcagtgtgcggaagaatctcaagctgcacctggtggcggtccttaagcacccctgcagc
ctggagttccagggtcagatcagcactctgctgctggacctgggaatgccccagagcgaa
ataacccgctccacacctgcagtgcgcgagcagcgcaaacgaccccgccatgagcaatac
acagagggaaagaaggtcaagatggatccgattgaagatgacgaagacaaagaggagccc
gcccccctcaccgcccctaaaccggctgctgttccggtggcacagtctgccatcgacctc
acagccgagttcctgcacccactgctcaaccctgagaacgtagccaacctggtgctcatc
agcatggtgtatctgcctgacgtcatgccagcatccttccaggccacatacacacctgtt
gagtcggcaggcactgatgcccagatcaaacatctggccaggctgatggccacgcagatg
acagcagctgggatcggtccaggtcttgagcagtgcaaagcccgagaggacgatgccatc
aaagaggaagacaacgacgaggactctggatcgaaagacctgctcatcaaacgcaaagtt
ccaggagtgatggtgggacaggcgatctctgtggtgggcggttacacagagaaggttcca
gccgtggaggctcccgccacagtcaagaggctcccagagcccatcgtgcccactgcacag
accaaaatgacgggggcaagtgggaggaaaaaagtgtttcggttgtcagatgtcatccag
cctttttcagacacccagattgagaagttaacctccagagcagtcaaacgcatcctgcat
tcagagaaggcgatcgctcaaagtggcatgtcccatgtccgagtgaagctcctctccagg
cttgtgacacaattcgaagggatgatgaaagaagacgtgcttgaatttatcctcgacgac
atcaggaccaggagtgacctggcgttttccctcctctaccaggagtacaacgcctacctc
agccagctgccctctggcctgttggacagctacgaccactgtctctacacgctgctgtcg
ggcctgcaggagaaaccagagcagagggatgggctcttcacgaaactggtgctggaggct
cccatcataacagaatctgctctggaagtgatccgacgttactgtgaggacgagtctcga
gtgtatctgggcatgaccactctgaaggagctcatcgtcaaacggccctcgaggcagttt
cagtatctgcatgttctcctggatctcagctcgcacgagaaagagaaggtgcggaccact
gccttggctttccttaagcgtatgtacgagaaagaccagctcagggactacatcgagaag
tttggtctgaactacctgcagctgctggtgcaccccaaccctccgtctctgctctttggg
gctgacaaagacacagaggtggcttctccctggactgaagagacggtgagacagtgtctg
ttcctctacctgtcgctgctgcctctgaaccaccggcttgtccatgagctggcgtccgtc
tacactgaggccatcgctgacatcaagcgcagcgtgcttcgagctatagagcagcctatc
cgtggaatggggatgaactctcccgagctgctgcttctggttgagaactgtcctaaagga
gcggagaccttggtcactcgctgcctgcatattttgacagacaaagtgcctccgtctcca
gagttggtggagagggtgcgagacctttaccataaacgtgttccagatgtccgtttcctc
atccccgtcataaatggcctagaaaagaacgaagtcatccaggctctgcccaagctgatc
aaacttaaccccatcgtggtgaaggaggtgttcaaccgtcttttgggaacgcagcacagt
gaggggagttcctctgtgtccccgctcaccccaggagacctgctcatcgccctacacaac
attgactccaccaaatgtgatatgaagtccatcattaaagccaccaacctgtgctttggg
gagaggaacgtctacacgtcggaggttttggcagttgtaatgcagcagctgatggagaac
agccccctccccatgctgctcatgcgtactgtcatccagtccctcaccatgtatcccaga
ctgggcggcttcgtcatgaacatcctctctcgtctcattgtgaagcaggtgtggaagtat
cccaaggtctgggagggatttgtgaagtgctgccaaaggacaaagcctcagtcgtacagc
gtgctcctgcagctgccgccggcccagctaaccagcgtgttcgagcgctgcccggagatg
agggagcctctcttactgcatgtccactctttcaccccgaaccagcaagctcacatatct
gcctccaccatggcagtcctggaggcaaacaaaaaaccagcgctgaaaccagcagagcct
gtcttggaaaaagagatggaaccactcactgctccagctgcctcggtttcagaaatggct
cccacagcgacactaacagaagcagagacgccggagcagcacgacctggcggtcaccaag
gacgaagaaccaatggagcaagagcacttggatcctgtgatacaggaagaaagtgtccac
gctgtctcccaggtggagttgacaaggaaagctgagactccatcacctcagccagaacca
gaaccagaaccagaggaaccgatggaggcgtctgaacctgaacctgaacctgaacctgaa
ccttcagacctccaggagccagaaagagatgttgaagctgaagtcaccggcactgaggca
ggaagcagcagcgaggaggttgaatga
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