Shewanella marisflavi: CFF01_00755
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Entry
CFF01_00755 CDS
T05400
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smav
Shewanella marisflavi
Pathway
smav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFF01_00755 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smav03021
]
CFF01_00755 (rpoC)
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_00755 (rpoC)
Enzymes [BR:
smav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFF01_00755 (rpoC)
Transcription machinery [BR:
smav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFF01_00755 (rpoC)
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFF01_00755 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ASJ95228
UniProt:
A0AAC9XM33
LinkDB
All DBs
Position
158804..163018
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEEMREELPSINSETRRKKITKRLKLIEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECVNGRGEGMAFESVAEVEKAYRTG
FAELHARVKVRITETTIGENGEHTESRRIVDTTVGRALLSQVLPKGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFHFATVSGASVGINDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMDNLSTETVINRDGEEETQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEEDCGTHEGLTMKPLIEGGDVVEALRERVL
GRVVAEDVYYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVISCDTDFGVCAACYG
RDLARGHLINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGTVKL
HNAKHVSNTDGKLVIVSRSSEIAIIDELGREKERYKVPYGTILEKLEDASVNAGEVIANW
DPHTHPIVSEVAGSIKFVDMIEGVTMTRQTDELTGLSSIVVLDVGQRPSAGKEMRPAIRL
VGADGNDLMIPGTEVPAQYFLPGKAIVNQDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEYSGTISFGKETKGKRRLVITPADGGKPYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCEITESGDSDFLPGEQVEVSRVKIANRELEAQGKAPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYAYHNKRNQAAQSGPAEE
VPAISASEAEQNLADLLNLAGSPD
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttgaaggcatc
aagatcggcctagcgtcgccagatctgatccgctcttggtcatttggtgaagttaagaag
ccagaaaccatcaactaccgtactttcaagcctgagcgtgaaggtttgttctgtgcgcgt
atttttggtccagttaaagactacgagtgtttatgcggtaagtataagcgtctaaagcac
cgtggtgtgatttgtgaaaagtgtggcgtagaagttacccagactaaagtgcgtcgtgag
cgtatgggtcacatcgatctcgctagcccagtggcacacatttggttcttgaagtcactt
ccgtctcgtatcggtttgatgctggatatgactctgcgtgatatcgagcgcgtactttac
ttcgaatcatttgtagtgatcgagcctggcatgaccagccttgagcgcggccaaatgctg
actgaagaaaactacctcgacgcactcgaagagtacggtgatgagtttgaagctaagatg
ggtgccgaagcggtacttgagctgttacgtgctatcgatcttgagaaagagattgaagag
atgcgcgaagagctgccatcgatcaactctgagactcgtcgtaagaagatcactaagcgt
ctaaagctcattgaagctttcttcacttcaggcaacaagccagagtggatgatcctcaag
gtgctaccggttctgccacctgatctacgtcctctagttccgctagatggcggtcgtttt
gctacgtctgatttgaacgacctttatcgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtctactagacctggcggcaccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgtcgatgcgctattagataacggtcgtcgtggtcgtgctattacgggttctaac
aagcgtccgcttaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactcaggccgttcggtaattaccgttggtcctact
ctgcgtctacatcagtgtggtcttcctaagaagatggcactggaactgtttaagccattc
atctatggcaagcttgaaggtcgcggtctagccacgacaattaaagcggctaagaagatg
gttgagcgcgaagtacctgaggtttgggacgtacttgatgacgtgatccgcgagcaccca
gtaatgcttaaccgtgcaccaacactgcacagattgggtattcaggcgttcgaacctgta
ctgattgaaggtaaagcgattcaactgcacccattagtgtgtgcggcctataacgctgac
ttcgacggtgaccaaatggcggttcacgtgccactgacgctagaagctcagttagaagca
cgttcactcatgatgtcgaccaacaacattctgtcacctgcaaacggtgagccggtgatc
acaccgtcacaggacgttgtattgggtctgtactacaccagccgtgaatgtgtaaacggc
cgcggtgaaggtatggccttcgaatcagttgcagaagttgaaaaagcttaccgcactggt
tttgccgagctacatgctcgcgttaaggttcgtatcactgaaaccactattggtgaaaat
ggtgagcataccgagtcacgtcgcattgtcgatacgactgtaggtcgtgcattactgtct
caggtactgccaaaaggtctgtcttatgatttggttaaccaaaacatgggcaagaagcag
atctctaagctactgaacacctgttaccgtcagctgggtctgaaagatacagttatcttt
gctgaccaattgatgtataccggtttccactttgcgaccgtatcgggtgcctctgtaggt
atcaacgacatggtgatcccggatgagaagtacacgcttgttgctgatgcagaagctgaa
gtacttgagatccaggagcagttccagtcgggtcttgtaaccgccggtgagcgctacaac
aaggttatcgatatctgggcaagtgcgaacgaaaaggtttctaaagcgatgatggataac
ctgtctaccgagacagtgattaaccgtgatggcgaagaagagacacaagcttcgtttaac
agcatctatatgatggccgactcaggcgctcgtggtagtgctgcacagattcgtcagcta
gcgggtatgcgtggtctgatggctaagccagatggctcgatcatcgaaaccccaattacc
gcgaacttccgtgaaggtctaaacgtactccagtactttatctctactcacggtgcgcgt
aagggtctagcggatacggcacttaagacagcgaactcgggttacctgactcgtcgtctg
gttgacgttgcacaagacttagtggttatcgaagaagattgtggtacccacgaaggtctg
accatgaagccgctgattgaaggtggtgacgtagttgaggcgttacgtgagcgtgttctg
ggccgtgtggttgcagaagatgtttactacccaggtactgaagatgtgcttgctccacgc
aacacgctgcttgacgaggcttggtgtgacaagctcgaagagcactctatcgatgaagtt
atcgtacgttcagtaattagctgtgacactgatttcggtgtatgtgcggcgtgttacggt
cgtgacttggcacgtggtcatctgatcaaccaaggtgaagctatcggtgttgttgccgct
cagtcaatcggtgagcctggtacacagctgacgatgcgtaccttccacattggtggtgcg
gcatcgagagcgtctgcagagaacaacgtacaggtgaagaatgccggtaccgttaagctg
cacaacgctaagcacgttagcaacacagacggtaagctggttatcgtatcgcgttcatct
gaaatcgcgattatcgatgagctgggtcgtgagaaagagcgttacaaggtgccttacggt
actatcctggagaagctagaagatgcatcggttaacgccggtgaagtcatcgctaactgg
gatccgcatactcacccaatcgtttctgaagtagcgggtagcattaagtttgtcgatatg
attgaaggtgtcaccatgacacgtcaaaccgacgaactaacgggtctctcttcaatcgtg
gtgctagatgttggtcaacgtccttctgctggtaaagagatgcgtcctgcgattcgtctg
gttggtgccgatggcaacgacttgatgatcccaggtaccgaagtaccagctcagtacttc
ctaccaggcaaggcgattgttaaccaagacgataatgcacaaattgccgtgggtgacgcg
cttgcacgtattccacaagaatcgtctaagactcgcgatattaccggtggtctaccacgc
gttgctgacttgttcgaagcgcgtaagccaaaagagcctgcgattctggctgagtactca
ggtactatctccttcggtaaggagaccaaaggtaagcgtcgtctagttatcacgcctgct
gatggtggtaagccatatgaagagatgattcctaagtggcgtaacctgaacgtgttcgaa
ggtgagaaagttgaacgcggtgaagtgatcgccgacggtccagaagctgcacacgacatt
ctgcgtctacgtggtatccacaaggtggctaactacatcgttaacgaagtccaagacgta
taccgtctacagggcgtgaagattaacgataagcacatcgaagtgattatccgtcagatg
ctgcgtaagtgtgagatcactgagtctggtgacagtgacttcctaccgggcgaacaggtt
gaagtgtcacgcgtgaagatcgctaaccgcgaacttgaagcgcaaggcaaagcacctgct
aagttcgaacgtgaactgctcggtatcaccaaggcatcgttggcaactgagtcatttatc
tcagctgcatccttccaggaaaccacgcgcgtattgaccgaagctgccgtaggcggtaag
agcgataagctacgtggcctgaaagagaacgtgatcgtgggtcgtctgatccctgcgggt
actggttatgcgtatcacaacaagcgtaatcaggcagcacaaagtggtccggcagaagaa
gtgccggctatcagtgccagtgaagcagagcagaaccttgccgatctattaaacctggcg
ggaagccctgattaa
DBGET
integrated database retrieval system
