Shewanella marisflavi: CFF01_00910
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Entry
CFF01_00910 CDS
T05400
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
smav
Shewanella marisflavi
Pathway
smav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFF01_00910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smav03021
]
CFF01_00910
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_00910
Enzymes [BR:
smav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFF01_00910
Transcription machinery [BR:
smav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFF01_00910
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFF01_00910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ASJ95259
UniProt:
A0AAC9XM73
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All DBs
Position
180107..181096
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVVIEGKDEAMLTLSKSGAGPVTAADITHDGD
VTIMNPDHVICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDSSFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEPE
QKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgtctcgttgatatcgagcaggttaac
ccaacacgtgccaaggttacactggagccgcttgagcgtggttttggtcatactctaggt
aacgcgttgcgtcgtatcctattgtcgtctatgcccggctgcgcggttaccgaagtcgag
attgatggtgtactgcacgaatacagcagcaaggaaggcgtacaagaggatatcctagaa
atcctattaaaccttaaaggtttagcagtggttatcgagggtaaagacgaggctatgctt
actttaagcaagtcaggcgcaggccctgttaccgcagcagatatcacgcacgatggtgat
gttactattatgaatcctgatcatgttatctgtcatctgactggtaataatgacattagc
atgcgtatccgtgttgaacgtggtcgtggttatgtgcctgcttctgcacgtgcacagacc
gaagacgatgatcgtccaatcggtcgtttgttagtggattcatctttctcacctgtcgcg
cgtattgcttacaatgttgaagcagcacgtgttgaacagcgtactgacttagacaaactc
gttatcgatatgaccactaacggaactatcgatcctgaggaagcaattcgtcgttctgcg
accatcttagctgaacagctagatgcgtttgttgagcttcgtgatgtcactgagccagag
cagaaagaagagaaaccagagttcgacccaattctgttgcgtcctgtcgacgatctagag
ctaactgtacgttcggctaactgtttgaaagccgaagcgattcattacatcggagatctg
gtacagcgtactgaggttgagctacttaaaactcctaacttgggtaagaagtctcttacc
gaaattaaggatgtgttggcttctcgcggactttcattaggtatgcgtctagaaaactgg
cctccggctagtttagcagacgacctataa
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