Shewanella marisflavi: CFF01_01885
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Entry
CFF01_01885 CDS
T05400
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
smav
Shewanella marisflavi
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smav03019
]
CFF01_01885
Messenger RNA biogenesis [BR:
smav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFF01_01885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
DUF6542
Motif
Other DBs
NCBI-ProteinID:
ASJ95435
UniProt:
A0AAC9TW23
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All DBs
Position
409580..411490
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AA seq
636 aa
AA seq
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MKLTQLLTKKLTGFWLLSLAAVAFIFLLTALVSFIQLTYKFQQQQISELEEMLLQHQVRH
ELQHLDIWLPQILAAYDAQTFTLIRGDETLYRFDRGDHQQSVVNYDRVLSEPLQLRFQIS
LLKPFLLHNISWHGGLVFLLGCIAVTLLVRRGYLWLAQQLQGIEDLAKRSHLILSGDYDK
ALAETGHGRPRLINRALTQMLLELDDAQKQRARFDQFIRSNTFLDPESGIGNRLFLKNRL
DALSNKDGMMAPGVLLLLEMEDLDLLQQEADEFSIQELLSQTIAGISHLLDSQANSIFSR
RSYNQFAIVVPQISLADAEKLAARLLKVCLSQPLEGVNNRDDFFHIGVAYFKVGESKEQL
IEEAEMALRAAQFQGNSGWFMYDKGAVDEEFARGSVRWRSFLEYALVNKRVVPFTQSVLD
SDGEEHHSEVSCRLRDNNGNLVRATLFLPMAIKCGLIPQIERQVIEAVLFDLLPRSPKDG
RQYSINLSLDTLTSRAFIRWLKTTLLEYRHLTPRLIFEINEDILVNNLTKLKAPLDMIAK
MGASLCVDRVGQQVVSTQYIQSCRFDLIKLHRSIVRQIHLRQENQLFVRSLIGGLYRSEV
QVFAEGIESFEEWQTLKILGVSAGQGSFFSEPMEVG
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaacacaactcctcactaagaagttaactggcttttggctgctttcccttgct
gcggtggcgtttatctttctgttgaccgccctggtcagttttattcagctcacctataag
tttcaacagcagcagatcagcgagcttgaagagatgttgctgcaacatcaggtgcgacat
gaacttcaacacttagatatctggctacctcagatcttggctgcctacgatgcacaaaca
tttaccctgatccgcggcgatgagaccttgtaccgtttcgatagaggtgatcatcagcag
agcgtcgtcaactacgacagggtgctgagtgaacctttacaactaagatttcagatcagc
ctgctcaagcctttcctgctgcataacatcagttggcatggcggcctggtctttttgctg
ggctgtatcgccgtaaccctgctagtgaggcgaggctacctctggctggcccagcagctg
caaggcatagaagatctggccaagcgcagccatctcattctctcgggggattatgataag
gcgctggcggagacaggtcatggccgaccaagactgatcaaccgagccctgacacagatg
ctgcttgaactggacgatgcacagaaacagcgcgccaggttcgatcagtttatccgctcc
aacaccttcctcgatcccgaatctggcataggtaatcgcctgtttctcaagaatcgtctc
gatgcgctgagcaacaaggatggcatgatggcccctggggtgctcttgctgctggagatg
gaagatctggatctgctacagcaggaggccgatgagtttagcatccaggaactgctcagc
cagacgattgccggtatcagtcatctgctggatagtcaggccaacagtattttctcccgt
cgttcctacaatcagtttgccatcgtggtgccgcagatctctttggctgacgccgaaaag
ctggccgcccgattgctgaaggtatgcctgagtcaacctcttgaaggggtgaataaccgt
gacgactttttccatatcggcgtggcctactttaaggttggcgagagcaaagagcagctg
atcgaagaggcagagatggcgctgcgtgcggcgcagttccagggtaatagcggttggttt
atgtatgacaagggcgcggtggatgaggagtttgcccgaggctctgtgcgctggcgcagt
tttctcgaatatgccttagtcaataaacgtgtggtgccctttactcagtctgtactggac
agcgatggtgaggagcatcatagcgaagtctcatgtcggctgcgtgacaataatggcaat
ctggtgcgggccacgctgtttttacccatggcgatcaagtgcggtctgatccctcagatt
gagcgtcaggtgatcgaggccgtgttattcgatctgttaccgcgctcccccaaggatggt
cgccaatacagtattaatctctctttggataccttaaccagccgagcctttatccgttgg
ctgaaaaccactttactggagtatcgtcatctgacacctcggctgatcttcgagatcaat
gaagatatcttggtgaacaacctgactaagttgaaggcgccgctggatatgatcgccaag
atgggcgccagcctgtgtgtcgaccgggtaggccagcaggtggtgagcactcagtatatt
cagtcttgtcgtttcgatctgatcaagctacatcgttctatcgtgcgtcagatacactta
cgtcaagaaaatcagttgtttgtaagaagtcttatcggtgggctataccgcagtgaagtg
caggtttttgccgagggaatagagtcgtttgaagagtggcagaccctaaaaattctaggg
gtgagtgccggtcagggcagcttttttagtgagcccatggaagtggggtga
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