Entry |
|
Name |
(GenBank) ATP-dependent RNA helicase
|
KO |
|
Organism |
smav Shewanella marisflavi
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:smav00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFF01_02540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:smav03019]
CFF01_02540
03009 Ribosome biogenesis [BR:smav03009]
CFF01_02540
Enzymes [BR:smav01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFF01_02540
Messenger RNA biogenesis [BR:smav03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFF01_02540
Ribosome biogenesis [BR:smav03009]
Prokaryotic type
rRNA helicases
CFF01_02540
|
SSDB |
|
Motif |
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Other DBs |
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LinkDB |
|
Position |
complement(565175..566983)
|
AA seq |
602 aa
MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMEGKDILGQAQTGTGKTGAF
ALPLLNAIDANANTPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIVVGTPGRVMDHMRRGTLKLETLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMNVPSPETVTERRLSRLGEQVSNTINNESLDFMHGAVAQLCQQLEVDTEA
LAAALLNMVQKERPLQLPPIQERQRDSRDERNSRDRSERGERGERSPRGRRESRPTPTNL
GKADTLKDHPDVKMCRYVIDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQMTSID
LPDGMPKDILQHLKKVRVCGKPLNIREAGTELAGASDDSRPARRRKPVGERKSHRKGGKD
NA |
NT seq |
1809 nt +upstreamnt +downstreamnt
atgtcatccagtgaaaaaactttccgcgaactcggcctgtccgagcctttgttgcgtgct
cttgacgagctaggttacgaaaaacctacgccaattcaagcagctagtatcgatcccctc
atggagggtaaagatattttaggccaggcacaaaccggtacaggtaaaacaggtgccttt
gcacttcccttattaaatgctatcgacgccaatgccaatactccacagatcttagtactc
gcgccaacacgtgagctagccgttcaggtcgccgaagcatttggtagctactccaaattt
atgaaaggcctgcatgtactgcctatctatggtggtcaaagcatgcaccagcagcttaat
gcgctgcgtcgtggtccacagatcgtagtcggcacgccaggccgcgtcatggaccatatg
cgtcgtggcaccctgaagcttgaaacgctaaaagctatggtgctcgatgaagccgatgag
atgctcaagatgggctttatcgacgatatcgagtggatcctggagcatacgcctaagcaa
cgccagctagcgctgttctctgcaaccatgccagagcagatcaagcgcgttgccaacaag
tatttgcaaacgccggtacacatcagcatcgccgccagccacaccacggttgagtcaatt
gagcagcgttttgttcaggtgtcacaacacaacaaactcgaagccttggtacgcgtactg
gaagtggaaaacactgaaggtatcatcatcttcgtgcgtacccgtaacagctgtgtcgaa
ttggctgagaaacttgaagcccgtggctatgcctcgtcaccgctgcatggtgatatgaac
cagcaggcccgtgaacgcgcagtagaccagcttaaacgcggcaagctagatatcttgatc
gctaccgatgttgccgcccgaggtctggacgttgagcgtatcggtcacgtgatcaactac
gacatcccatacgataccgaagcctatgtacaccgtattggtcgtactggccgcgcgggt
cgtaccggtatggcgattctgttcgtcacccacagagagatgcgtatgctgcgtaccatt
gagcgtgcgaccaagagtcgtatttcgccaatgaatgtacctagcccagaaaccgttacc
gagcgtcgtttgtctcgcttaggtgagcaggtatcaaacaccatcaacaatgagtcatta
gactttatgcatggtgccgttgcacagctttgtcagcagctggaagtggataccgaagct
ttggctgccgccctgcttaacatggtgcaaaaagagcgtccactgcaactgccaccgatc
caggaacgccagcgcgatagtcgtgatgagcgtaactcacgtgatcgtagtgaacgtggt
gagcgcggcgaacgtagccctcgtggccgtcgtgaatcgcgtccaacgccaaccaatctg
ggtaaggctgacacgcttaaagatcatccagatgtcaagatgtgccgttacgtcatagat
gtcggccgtgaccacggcgtgggtgtgggtaacattgtgggcgccgtagccaacgaagcc
aacatcgacagccgctacattggccagatccagctattcgatcagatgacctctatcgat
ctgcctgatggcatgccaaaagatatactgcaacacctcaagaaggtgcgcgtatgtggt
aagccactcaatattcgcgaagcgggaactgaacttgcgggtgcgtcagatgacagccgt
ccagcacgtcgtcgtaagcctgtcggcgagcgtaaatctcaccgcaaaggcggtaaagat
aacgcttaa |