Shewanella marisflavi: CFF01_02540
Help
Entry
CFF01_02540 CDS
T05400
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smav
Shewanella marisflavi
Pathway
smav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFF01_02540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smav03019
]
CFF01_02540
03009 Ribosome biogenesis [BR:
smav03009
]
CFF01_02540
Enzymes [BR:
smav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFF01_02540
Messenger RNA biogenesis [BR:
smav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFF01_02540
Ribosome biogenesis [BR:
smav03009
]
Prokaryotic type
rRNA helicases
CFF01_02540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASJ95551
UniProt:
A0AAC9TYU2
LinkDB
All DBs
Position
complement(565175..566983)
Genome browser
AA seq
602 aa
AA seq
DB search
MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMEGKDILGQAQTGTGKTGAF
ALPLLNAIDANANTPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIVVGTPGRVMDHMRRGTLKLETLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMNVPSPETVTERRLSRLGEQVSNTINNESLDFMHGAVAQLCQQLEVDTEA
LAAALLNMVQKERPLQLPPIQERQRDSRDERNSRDRSERGERGERSPRGRRESRPTPTNL
GKADTLKDHPDVKMCRYVIDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQMTSID
LPDGMPKDILQHLKKVRVCGKPLNIREAGTELAGASDDSRPARRRKPVGERKSHRKGGKD
NA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaaaaactttccgcgaactcggcctgtccgagcctttgttgcgtgct
cttgacgagctaggttacgaaaaacctacgccaattcaagcagctagtatcgatcccctc
atggagggtaaagatattttaggccaggcacaaaccggtacaggtaaaacaggtgccttt
gcacttcccttattaaatgctatcgacgccaatgccaatactccacagatcttagtactc
gcgccaacacgtgagctagccgttcaggtcgccgaagcatttggtagctactccaaattt
atgaaaggcctgcatgtactgcctatctatggtggtcaaagcatgcaccagcagcttaat
gcgctgcgtcgtggtccacagatcgtagtcggcacgccaggccgcgtcatggaccatatg
cgtcgtggcaccctgaagcttgaaacgctaaaagctatggtgctcgatgaagccgatgag
atgctcaagatgggctttatcgacgatatcgagtggatcctggagcatacgcctaagcaa
cgccagctagcgctgttctctgcaaccatgccagagcagatcaagcgcgttgccaacaag
tatttgcaaacgccggtacacatcagcatcgccgccagccacaccacggttgagtcaatt
gagcagcgttttgttcaggtgtcacaacacaacaaactcgaagccttggtacgcgtactg
gaagtggaaaacactgaaggtatcatcatcttcgtgcgtacccgtaacagctgtgtcgaa
ttggctgagaaacttgaagcccgtggctatgcctcgtcaccgctgcatggtgatatgaac
cagcaggcccgtgaacgcgcagtagaccagcttaaacgcggcaagctagatatcttgatc
gctaccgatgttgccgcccgaggtctggacgttgagcgtatcggtcacgtgatcaactac
gacatcccatacgataccgaagcctatgtacaccgtattggtcgtactggccgcgcgggt
cgtaccggtatggcgattctgttcgtcacccacagagagatgcgtatgctgcgtaccatt
gagcgtgcgaccaagagtcgtatttcgccaatgaatgtacctagcccagaaaccgttacc
gagcgtcgtttgtctcgcttaggtgagcaggtatcaaacaccatcaacaatgagtcatta
gactttatgcatggtgccgttgcacagctttgtcagcagctggaagtggataccgaagct
ttggctgccgccctgcttaacatggtgcaaaaagagcgtccactgcaactgccaccgatc
caggaacgccagcgcgatagtcgtgatgagcgtaactcacgtgatcgtagtgaacgtggt
gagcgcggcgaacgtagccctcgtggccgtcgtgaatcgcgtccaacgccaaccaatctg
ggtaaggctgacacgcttaaagatcatccagatgtcaagatgtgccgttacgtcatagat
gtcggccgtgaccacggcgtgggtgtgggtaacattgtgggcgccgtagccaacgaagcc
aacatcgacagccgctacattggccagatccagctattcgatcagatgacctctatcgat
ctgcctgatggcatgccaaaagatatactgcaacacctcaagaaggtgcgcgtatgtggt
aagccactcaatattcgcgaagcgggaactgaacttgcgggtgcgtcagatgacagccgt
ccagcacgtcgtcgtaagcctgtcggcgagcgtaaatctcaccgcaaaggcggtaaagat
aacgcttaa
DBGET
integrated database retrieval system
