KEGG   Shewanella marisflavi: CFF01_02540
Entry
CFF01_02540       CDS       T05400                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
smav  Shewanella marisflavi
Pathway
smav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFF01_02540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smav03019]
    CFF01_02540
   03009 Ribosome biogenesis [BR:smav03009]
    CFF01_02540
Enzymes [BR:smav01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CFF01_02540
Messenger RNA biogenesis [BR:smav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CFF01_02540
Ribosome biogenesis [BR:smav03009]
 Prokaryotic type
  rRNA helicases
   CFF01_02540
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_30 Cas3-like_C_2
Other DBs
NCBI-ProteinID: ASJ95551
UniProt: A0AAC9TYU2
LinkDB
Position
complement(565175..566983)
AA seq 602 aa
MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMEGKDILGQAQTGTGKTGAF
ALPLLNAIDANANTPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIVVGTPGRVMDHMRRGTLKLETLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMNVPSPETVTERRLSRLGEQVSNTINNESLDFMHGAVAQLCQQLEVDTEA
LAAALLNMVQKERPLQLPPIQERQRDSRDERNSRDRSERGERGERSPRGRRESRPTPTNL
GKADTLKDHPDVKMCRYVIDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQMTSID
LPDGMPKDILQHLKKVRVCGKPLNIREAGTELAGASDDSRPARRRKPVGERKSHRKGGKD
NA
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgtcatccagtgaaaaaactttccgcgaactcggcctgtccgagcctttgttgcgtgct
cttgacgagctaggttacgaaaaacctacgccaattcaagcagctagtatcgatcccctc
atggagggtaaagatattttaggccaggcacaaaccggtacaggtaaaacaggtgccttt
gcacttcccttattaaatgctatcgacgccaatgccaatactccacagatcttagtactc
gcgccaacacgtgagctagccgttcaggtcgccgaagcatttggtagctactccaaattt
atgaaaggcctgcatgtactgcctatctatggtggtcaaagcatgcaccagcagcttaat
gcgctgcgtcgtggtccacagatcgtagtcggcacgccaggccgcgtcatggaccatatg
cgtcgtggcaccctgaagcttgaaacgctaaaagctatggtgctcgatgaagccgatgag
atgctcaagatgggctttatcgacgatatcgagtggatcctggagcatacgcctaagcaa
cgccagctagcgctgttctctgcaaccatgccagagcagatcaagcgcgttgccaacaag
tatttgcaaacgccggtacacatcagcatcgccgccagccacaccacggttgagtcaatt
gagcagcgttttgttcaggtgtcacaacacaacaaactcgaagccttggtacgcgtactg
gaagtggaaaacactgaaggtatcatcatcttcgtgcgtacccgtaacagctgtgtcgaa
ttggctgagaaacttgaagcccgtggctatgcctcgtcaccgctgcatggtgatatgaac
cagcaggcccgtgaacgcgcagtagaccagcttaaacgcggcaagctagatatcttgatc
gctaccgatgttgccgcccgaggtctggacgttgagcgtatcggtcacgtgatcaactac
gacatcccatacgataccgaagcctatgtacaccgtattggtcgtactggccgcgcgggt
cgtaccggtatggcgattctgttcgtcacccacagagagatgcgtatgctgcgtaccatt
gagcgtgcgaccaagagtcgtatttcgccaatgaatgtacctagcccagaaaccgttacc
gagcgtcgtttgtctcgcttaggtgagcaggtatcaaacaccatcaacaatgagtcatta
gactttatgcatggtgccgttgcacagctttgtcagcagctggaagtggataccgaagct
ttggctgccgccctgcttaacatggtgcaaaaagagcgtccactgcaactgccaccgatc
caggaacgccagcgcgatagtcgtgatgagcgtaactcacgtgatcgtagtgaacgtggt
gagcgcggcgaacgtagccctcgtggccgtcgtgaatcgcgtccaacgccaaccaatctg
ggtaaggctgacacgcttaaagatcatccagatgtcaagatgtgccgttacgtcatagat
gtcggccgtgaccacggcgtgggtgtgggtaacattgtgggcgccgtagccaacgaagcc
aacatcgacagccgctacattggccagatccagctattcgatcagatgacctctatcgat
ctgcctgatggcatgccaaaagatatactgcaacacctcaagaaggtgcgcgtatgtggt
aagccactcaatattcgcgaagcgggaactgaacttgcgggtgcgtcagatgacagccgt
ccagcacgtcgtcgtaagcctgtcggcgagcgtaaatctcaccgcaaaggcggtaaagat
aacgcttaa

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