Shewanella marisflavi: CFF01_02935
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Entry
CFF01_02935 CDS
T05400
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
smav
Shewanella marisflavi
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smav03009
]
CFF01_02935
Enzymes [BR:
smav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFF01_02935
Ribosome biogenesis [BR:
smav03009
]
Prokaryotic type
rRNA helicases
CFF01_02935
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Cas3-like_C_2
ResIII
AAA_30
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ASJ95622
UniProt:
A0AAC9TYD7
LinkDB
All DBs
Position
646493..647899
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AA seq
468 aa
AA seq
DB search
MSQSDATTPSGAFDSLPLKPALLETLQSIGFYQMTPIQAQSLPAILNGQDVIGQGKTGSG
KTAAFGLGLLNRLDVKRFRIQSLVMCPTRELADQVAAELRTLARGIHNIKILTLCGGVPM
GPQIGSLEHGAHIIVGTPGRIIDHLDRGRLDLDNVNMLVLDEADRMLEMGFQRELDAIMQ
SVPRERQTLLFSATFPEQIQGLSEQIMIDPLMVKVEAQHDSESIKQHFYECGNNNDRMKA
LQLLLLAHRPESAVVFCNTKRETKDVAAKLINAGFSVVSLHGDLEQRDRDQMLLKFANKS
ANIMVATDVAARGLDIDALDMVVNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFFNHEDGY
KITLLADLIGREIDGEELPDESLLNTLPPQPRMVTIQIDGGKKQKVRPGDILGCLTGDNG
IEGSEVGKIKITEFRSYVAVDRKVLRKALNKIVKGKLKGKSYRAWELN
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcaatctgacgctactacgccaagcggggcttttgatagcctgccgctaaaaccc
gctttgcttgagaccctgcaatccataggcttttatcagatgacgcctattcaggcccag
agtctgcctgccattctcaatggacaggatgtcataggtcaggggaagacggggtcgggt
aagacggccgcctttggtttagggctgcttaaccgtctggatgtgaagcgttttcgtatt
cagtctctggtgatgtgtcctacccgtgagctggcagatcaggtggcggctgagctacgc
accctggcgcgcggtattcataacattaagatcctcaccctgtgtggtggtgtgcctatg
gggccgcagattggctcgttggaacacggagcccacattatagtgggtaccccgggacgc
attatcgatcacttagacagaggtcgtttagatctcgacaacgtcaacatgttggtgctc
gacgaggcggatcgtatgctggagatgggttttcagcgcgagctggatgccatcatgcag
tcggtgccgcgcgagcgacaaaccctgctgtttagcgccaccttccccgagcagatccaa
gggcttagcgagcagatcatgatcgaccccctcatggtgaaggtcgaggcccagcatgac
agcgagagcatcaagcagcatttctacgagtgcggcaataacaatgatcgcatgaaggcg
ctgcagcttctgctgttggctcatcgccccgagagcgctgtggtcttctgtaataccaag
cgtgaaaccaaagatgtggcggcgaaattaattaatgccggttttagtgtggtgtcactg
cacggcgatctggagcaacgggatcgcgaccagatgctgctcaagtttgccaacaagagt
gccaacatcatggtggcgaccgacgtagccgctcgcggcctagatatcgacgccttagac
atggtggtcaactaccatgtggcctatgacacagaggtgcacattcaccgcatcggccgc
accggacgtgccggcagcaagggcgcggcctacaccttctttaatcacgaagatggttac
aagataacactactggcggaccttattggccgcgagatagacggcgaagagttaccagac
gaaagtctgctaaataccctgccgcctcagcctagaatggtcaccattcagatcgatggt
ggtaagaaacagaaggtacgtccaggcgatatcttaggctgcctcaccggtgacaacggc
atcgagggcagtgaagtgggtaagattaagatcaccgagtttcgctcctatgtggcggtg
gatcgtaaagtgctgcgcaaggcgctcaataagatcgtcaaaggtaagctcaagggtaag
agttatcgggcgtgggaattgaattaa
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