Shewanella marisflavi: CFF01_02960
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Entry
CFF01_02960 CDS
T05400
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smav
Shewanella marisflavi
Pathway
smav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFF01_02960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smav03019
]
CFF01_02960
Enzymes [BR:
smav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFF01_02960
Messenger RNA biogenesis [BR:
smav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFF01_02960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
DUF8086
P-loop_SecA
AAA_30
HI1480
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASJ95626
UniProt:
A0AAC9TYZ8
LinkDB
All DBs
Position
complement(652822..654258)
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AA seq
478 aa
AA seq
DB search
MSFTSLGLSAPILNAVTEKGYLTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGPRARSKQVRALVLTPTRELAAQIAESVTTYGKHLPLRSAVVFGGVGIGPQISQL
KRGVDILVATPGRLLDLYQQDALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPTKRQ
NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNTTANTVQQLICPVDKSKKSAALIALIKQ
NNWQQVLVFSRTKHGANRLAKTLDGKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAISLVSSEEAKLLVDIER
LIGKQLPRTEVEGFEPTHELPETTLTPKRHGQHKGPRNPKSDGNRNSRSGQPQKANRPKA
DNEGQSKGRSGNGKPASQGQASAGKQQSAGQGKSEHRDGNAPARRRRRRPRQATQAKN
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctaggtttatccgcccccattttaaacgccgtaaccgaaaaaggt
tatctgacgccgtcccccatccaagcccaggcaatacccgccgtcttgtcaggcaaggac
gtgatggccgccgcgcaaaccgggacaggcaagaccgcaggctttaccctgccgttactc
gagctactaagcaagggaccacgtgcccgcagcaaacaggtacgcgccctggtgctcacc
cctactcgcgaattagcggcgcagatcgccgaaagcgttaccacctatggaaagcatctg
cctcttcgcagcgccgtagtgtttggcggtgtcggcattgggccgcagatcagtcaactt
aagcgcggcgtcgatatcttggtagccacgccaggtcgtctgttggatctctaccagcaa
gatgctcttagctttagccagctggaggtcttagtcctggacgaagccgaccgcatgttg
gatatgggctttattcacgacattaagaagatcctggccatcttaccgaccaaacgtcag
aacctgatgttttcggccaccttctccgatgagatccgcaccttggctaaagggctggtt
aacaatccggtggagatctcggttacgccacgtaacaccacggccaatacggtacagcag
cttatctgccccgtagataagagtaagaagtcggcggccctaatcgccctcatcaaacag
aataactggcagcaggtgttggtatttagccgtaccaaacatggcgccaaccgtctggcc
aagaccctggacggcaaagggatcaccgcagcggcgatccacggcaacaagagtcagggc
gcccgcactaaggcgctggccaactttaagagcggcgatgtacgcgtactggtcgccaca
gatatcgccgcccgcggcctagatatcgatcaactgcctcaagtggtcaacttcgatctg
cccaatgtgcccgaggattatgtgcatcgtatcggccgtaccggtcgcgccggcgccgac
ggcaaggcgatctctctggttagcagcgaagaagctaagctactggtggatatcgagcgt
ctgatcggcaagcaactgccccgcaccgaggtagagggctttgagccgacccacgagctg
cctgagaccacgctgacgcctaagcgccatggccagcacaagggacctcgtaatcccaaa
tcagatggcaaccgcaactcgcgcagcggccagccccagaaggccaacaggcccaaggca
gataatgaaggccaaagcaaaggtcgctcgggcaatggcaagcctgctagccaaggtcag
gcatctgcaggtaagcaacaaagtgcgggccaaggcaagagcgagcacagagacggtaac
gccccagcgcgtcgcagacgtcgccgcccgagacaagcgactcaggcaaaaaactaa
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