Shewanella marisflavi: CFF01_03785
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Entry
CFF01_03785 CDS
T05400
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smav
Shewanella marisflavi
Pathway
smav03410
Base excision repair
smav03430
Mismatch repair
smav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CFF01_03785 (recJ)
03430 Mismatch repair
CFF01_03785 (recJ)
03440 Homologous recombination
CFF01_03785 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_03785 (recJ)
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CFF01_03785 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CFF01_03785 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFF01_03785 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ASJ95780
UniProt:
A0AAC9TWU0
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All DBs
Position
847004..848728
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AA seq
574 aa
AA seq
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MIHKIVRRPKVDDSHLPNHLSPILKQVYASRGCTTSDCELALANLLRPDTLKDVDRAAAI
IADAMAQQQSILIVGDFDADGATSTSVCLLALRMMGAANVDYLIPNRFDYGYGLSPEIVQ
VAQQMGAQLLITVDNGISSIEGVAAAKALGMQVVITDHHLPGQAVPQADAIVNPNQLGCG
FASKAIAGVGVAFYLMSALRAELRSRNWYQAKGINEPNLATLLDIVALGTVADVVSLDTN
NRILVDAGLKRVRAGRCRPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCDDMMRARRMASELDGLNAERRELETGMQQEALKSLESLSLNEAELPWGIALYQQ
DWHQGVIGILASRIKDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINARHPGMI
IKFGGHAMAAGLSLRAGEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALAR
ELRSAGPWGQNFPEPIFDGVFRILQQRIVGERHLKLVLESECGQTMVDAIAFNVDLTTWP
DATIQYAEVAYKLDINEFRGNESLQLMVEQIEPK
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccataagatagtacgccgccctaaggtagatgatagccatctgccgaatcatctt
tcgcccatcttaaagcaagtctatgccagccgaggatgcaccacgagcgactgcgagtta
gcgctggctaacctactgcgccccgatacgttaaaggatgtagatagggccgcggccatt
attgccgacgcgatggcccagcagcaatccatcttgatcgtgggcgacttcgatgccgac
ggtgccacctccaccagtgtctgtctgctggctctgagaatgatgggcgctgccaatgtg
gattaccttatccctaaccgattcgattatggctatggtctcagtcctgagatagtgcag
gtggcccagcaaatgggggcgcagctgctgataaccgttgataacggtatctcctccatc
gagggggtcgccgccgctaaggccttgggaatgcaggtggtgatcaccgaccatcacctg
ccgggtcaagctgtaccgcaggccgatgcgatagtgaatcctaaccagctgggttgtggc
tttgccagtaaggcgatcgccggggttggcgtagccttctacttaatgtcagccctgcgc
gccgagctgcgcagtcgtaactggtatcaggctaagggcattaatgagcctaatctggcg
accttgctggatatcgtggccttgggcacagtggcggatgtggtgtcactggataccaat
aaccgcatcttagtggacgccgggctcaagcgggtgcgcgccgggcgctgccgtccaggg
atcacagctttattagaggtggccaagcgtaacacctcgcgcatcgtggcctctgatttt
ggttttgccgttggccccaggctaaacgccgccggccgtctcgatgagatggctttgggg
gtcgagaccttgttgtgtgacgacatgatgcgtgctcggcgcatggcgagcgagctggat
ggtctaaacgccgagcggcgcgagctggaaaccggcatgcagcaggaggcactaaagagc
ctagagagcctgtcccttaatgaggctgagctaccctggggtatcgccctctaccagcaa
gactggcatcagggggtgataggtatcttggcgtcgcggatcaaagacaaataccacagg
ccagttatcgcctttgccgaagcgggggaaggcgagatcaagggctcggctcgctctatt
aaaggcttgcatatgcgcgacctgttagagctgatcaatgcccgtcatcctggaatgatc
atcaagttcggcggccacgccatggcggcgggtctgtcgctgcgtgccggtgaattcgag
cgtttcgccaaggcctatgatgaggcggtgcgtgaactgttagcgcccgagcagttgact
ggcgagatagtcagcgacggcgaactaagccctgctcagctcaatatggcgctggccaga
gagcttcgcagcgctggtccttgggggcaaaatttccccgagccgatatttgatggcgtg
tttcgtatcctgcagcagcggattgtgggtgagcgtcacctcaaactcgtgcttgagagt
gaatgcggtcagaccatggtcgatgccattgcctttaacgtggatctcaccacctggccc
gatgccaccattcaatatgccgaagttgcctataaactggatatcaatgagtttcgtggt
aatgagagcctacagctcatggtggagcagatcgagcctaagtag
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