Shewanella marisflavi: CFF01_05275
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Entry
CFF01_05275 CDS
T05400
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
smav
Shewanella marisflavi
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smav03016
]
CFF01_05275
Enzymes [BR:
smav01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CFF01_05275
Transfer RNA biogenesis [BR:
smav03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CFF01_05275
Prokaryotic type
CFF01_05275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ASJ96037
UniProt:
A0AAC9XMK3
LinkDB
All DBs
Position
1172276..1173223
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AA seq
315 aa
AA seq
DB search
MARKPRGRLVDGIVLLDKDTGMSSNFALQRVKRIYNAAKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGVRTDTSDSDGEVVQTRPIDFTQQQLEEALEYFRGETMQ
VPSMYSALKYQGQPLYKYAREGKEVPREARPITVHELNFIKLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTGVAGYPYDKMVTLEQLEALLAQAQSEDVAPKVLLDPLL
LPMDTAVSDLKEINVSDELAHYLMNGNPVQVANLPVDELVRITLGDARRFVGIGQMNDDG
LLAPKRLVVLHDEQA
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtaaacctagaggtcgattggtcgacggcatagtgctgctggacaaagacacg
ggaatgagctccaactttgccctgcaaagagttaaacgtatctataacgcggcgaaggcg
ggccacacaggcgcgctagatccactcgccactggcatgctgcctatctgcttgggggaa
gcgaccaagttctcccagcatctgctagatgccgataagcgctatctggtcaccgctaaa
ttgggtgtgcgcaccgataccagcgattcagatggtgaagtggtgcagacgcgtcctatc
gactttactcagcagcaactcgaagaggcgcttgagtattttcgcggtgagaccatgcag
gtcccttctatgtactcggcgctcaaatatcagggccagcctctgtacaagtatgcccgt
gaaggcaaagaggtgccccgtgaggcgcgtcctatcacagtgcatgagcttaactttatt
aagctcgaaggtgacgaactgacgctggatattcattgttccaaggggacctatattcgc
acgatcacagacgatctgggtgagatgttaggttgtggcgcgcatgtgatcatgttacgc
cgcaccggggtggcaggttatccttatgacaagatggtgaccctggaacaactagaggca
ctgcttgctcaagctcaaagtgaggatgttgcaccgaaagtcttactcgatcctttattg
ctacctatggacactgcggtcagcgatttgaaagagatcaatgtcagcgatgagctggcc
cattatctgatgaatggtaaccctgttcaggtagcgaatctgcccgtcgatgagctggtg
cggatcaccttaggtgacgcaaggcgatttgtcggtataggtcagatgaatgacgatggc
ttactggcgccaaagcgcctggtggttctgcatgacgagcaggcttaa
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