Shewanella marisflavi: CFF01_05290
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Entry
CFF01_05290 CDS
T05400
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smav
Shewanella marisflavi
Pathway
smav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFF01_05290 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smav03019
]
CFF01_05290 (pnp)
03016 Transfer RNA biogenesis [BR:
smav03016
]
CFF01_05290 (pnp)
Enzymes [BR:
smav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CFF01_05290 (pnp)
Messenger RNA biogenesis [BR:
smav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFF01_05290 (pnp)
Transfer RNA biogenesis [BR:
smav03016
]
Prokaryotic type
tRNA degradation factors
CFF01_05290 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
HATPase_c_2
RNase_II_C_S1
DUF6946
Motif
Other DBs
NCBI-ProteinID:
ASJ96040
UniProt:
A0AAC9XMP1
LinkDB
All DBs
Position
1175907..1178009
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AA seq
700 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEISPEVISMIGTSAALSISGIPFNGPLGSAQVGYVDGEYILNPTVSQLKESQLELSVAG
TENAVLMVESEASALPEEVMLGAVVYGHEQQQVVINAIKELRAEVNKPMWDWKPAEVDAE
LVEKVRVLAEEGFTNAYQITAKHERRDAVIEVKQAAIAKLVEENPDVDLAEADKLLGSLE
KKVVRSRIIAGNPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAI
SGHRADISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASAN
GEATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEAASE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaagagttttgaatatggtcagcacacagtcacgctagagactggg
gttattgcacgtcaagcagacgcagctgttttggcaagtatgggtgatacaacagtattg
gtaactgttgttggcaagaaagctgaagagccaggtcgtgactttttcccgttaaccgtt
aattaccaggaaaaaacttacgctgcgggtaaaatccctggtggatttttcaaacgcgaa
ggccgtccttcagaaggcgaaacccttactgcgcgtctgattgaccgtcctattcgtcca
ctattcccgaatggttttaagaacgaagttcaagtcatcatcactgtggtttctgttgat
ccagagatcagcccagaagttatctctatgataggtacctcggcggcgctgtctatctca
ggcatcccattcaacggtccactaggttcagcccaagtaggttatgtcgatggcgaatat
atcctcaacccaacggtttctcagttaaaagagagtcaacttgagctgtctgttgctggt
accgaaaatgcggtacttatggttgagtctgaagccagtgctctgcctgaagaagttatg
ctaggtgcagtggtttatggtcacgagcagcagcaagtggtgatcaatgccattaaagaa
ctgcgcgccgaagtaaacaagccaatgtgggactggaaacctgctgaagttgatgctgag
ttggttgagaaggttcgcgtactggccgaagaaggttttaccaatgcttaccagatcact
gctaagcatgagcgtcgtgacgccgttatcgaagtgaagcaagcggctatcgctaagctg
gtagaagaaaatccagacgttgatcttgctgaagccgacaagctgctgggtagcctggag
aagaaggttgttcgtagccgaatcatcgctggtaacccacgtatcgacggccgtgagcca
gatatgatccgtgccctgagcgtgatggctggcgtactgccacgtactcacggtagtgca
ctgttcacccgtggtgaaactcaggcactggtcacttgtaccttaggtactgagcgtgac
gcacagaagatcgatagcatcatgggcgagcaaaccagccgcttcatgctgcactacaac
ttcccaccatactctgttggtgaaaccggtatggttggttcgcctaagcgtcgtgaaatt
ggtcacggtaagctagcatggcgcggtatcaatgccgttatgccaacggctgaagagttc
ccatacagcgtacgtgtagtgtctgaaatcacagaatctaacggttcaagctctatggct
tctgtatgtggtacttctctggcactgatggacgctggtgtaccgatcaagacttcggtt
gccggtattgctatgggtctagtgaaggaaggcgatgactttgtcgttctgtctgacatc
ttgggtgatgaagatcacttaggtgacatggactttaaagtagccggtactcgtgacggt
atcactgcactgcagatggatatcaagatcgaaggtatcactcaggagatcatgcagatc
gcactgcaacaagcctatggtgctcgtgtgcatatcttgaacgtgatggaccaagctatc
tctggtcaccgtgcagatatctctgatcacgctccacgtatcaccactctgaagattaac
ccagagaagattcgtgacgtgattggtaaaggtggcgcaaccattcgcgcgctaaccgaa
gagactggcactaccatcgagctggaagatgacggtactgtgaagattgcttcagctaac
ggcgaagcgactaaagaagctatccgtcgtatccaggagatcactgcagaagttgaagtc
ggtactgtttacaatggtaaggttgttcgtatcgttgacttcggtgccttcgtgactatc
cttccgggtaaagacggtctggtgcatatttcacaaatcgctgaagagcgtgttgctaac
gtttctgactacttagaagttggtcaggaagtgaaggttaaggtgatggaagttgatcgc
caaggccgcgtacgtctgtcgatgaaagaagctcagccgaaagaagaagcggcaagcgaa
taa
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