Shewanella marisflavi: CFF01_08680
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Entry
CFF01_08680 CDS
T05400
Name
(GenBank) lytic transglycosylase
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
smav
Shewanella marisflavi
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
smav01011
]
CFF01_08680
Enzymes [BR:
smav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
CFF01_08680
Peptidoglycan biosynthesis and degradation proteins [BR:
smav01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
CFF01_08680
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM_RLK
DUF4365
Motif
Other DBs
NCBI-ProteinID:
ASJ96659
UniProt:
A0AAC9U010
LinkDB
All DBs
Position
complement(1999121..2000656)
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AA seq
511 aa
AA seq
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MRLPIFLIAGGLSLLAGCQTFTQPEPEPTIATTTPIVVEPQVTAPIEPEPIQITDVWQRI
RLGLSMPVPDQKLVNQYRDWYLKHPQHLARVSERAEPFMYLIVEEIEQRNLPIELALLPI
VESAFDPFAYSHGAASGLWQFTAPMAKHFGLEMNWWYDGRRDVPAATTAALDMMEYLYQK
THNNWLYAIAAYNTGEGRVLNAVKRNQSKGLATDFWALSLPRETERYVPQLLALADVVAN
AEKYGISLHPIPNQPQLKVVDVGSQIDLALAAEMAGMKLNELHALNPGFNQWATAPEGPH
QIVVPLDRADVFETNLAASSQDQRLKWQRYKIKSGDSLGLIAKRFNTTPSALRAVNDIKN
NRIIAGKHLLIPISAKDPAKYLLSADQRLQKRQSGGNGYKLSYQVKSGDSLWLIAKQHKV
SVSKLAKWNGMAPKDTLSVGQKLVIWQQGKDKAVTRTVNYTVRSGDSLAKIASKFNVSVN
QLVKWNSLSTKKYLQPGQKLTLYVDVTKSRV
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttacccattttcctgatcgcagggggactctccctgctcgcaggttgccaaacc
tttactcagccggaacctgaaccgaccatagccaccacaacccccatagtggttgaaccc
caagtgacggctcctatcgaacctgagcccattcagatcaccgatgtgtggcagcgtatt
cgtctggggctttctatgcctgtacccgatcagaaactggtgaatcagtatcgcgactgg
tatctgaagcatccccagcacctggcccgcgtttctgagcgtgctgagccctttatgtat
ctcattgtcgaagagatagagcagcgcaacttacctatcgagttggcactactgcctatc
gtcgagagcgcattcgatcccttcgcttattcccatggcgctgcatctggcttatggcaa
tttactgcccccatggctaaacactttggcctggagatgaactggtggtatgacggtcgc
cgcgatgtgcctgctgcaaccacggcagcactggatatgatggaatacctctatcaaaaa
acccacaacaattggctctatgctattgccgcctataacacgggcgaagggcgtgtactc
aatgcggtgaaacgcaaccagtctaaagggctagcgaccgatttctgggcactgagccta
ccaagggaaactgagcgctatgtcccgcaactattagcactcgccgatgtcgtagccaat
gccgaaaaatatgggatctcgctccaccccattcctaaccagccgcaactgaaagttgtt
gatgtaggcagccaaatcgatctggcactcgccgccgagatggcaggtatgaagcttaac
gaactgcacgccttaaatcctggctttaaccagtgggcgactgcgcctgaaggccctcac
cagatagtggtgccgcttgatcgcgctgacgtgtttgaaactaatttagcggccagcagc
caagatcagcgcctaaaatggcagcgttataagataaagtcgggtgatagcctagggcta
atcgccaagcgctttaacaccacaccatcggcgctccgtgcggttaacgatattaaaaac
aaccgtattattgccggcaagcatctactgatccctatctctgccaaagatcccgccaag
tatctcttgtctgcggaccaaagattacaaaaacgtcaatctggtggtaacggctataaa
ctcagctaccaggttaaatcaggggactcactctggcttatcgccaaacagcacaaggta
agtgtgtctaaactggctaaatggaatggtatggccccaaaagatactctctctgtgggg
caaaagttggtgatctggcaacaaggcaaggataaggcggtcacccgcacagtcaattac
acagtacgctctggcgattcactggctaaaatagccagtaaattcaatgtcagcgtaaac
caactggttaaatggaacagcctgtcgaccaaaaaatatctacaaccaggacagaagctg
accctgtatgttgatgtgactaaatcacgagtttaa
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