Shewanella marisflavi: CFF01_11195
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Entry
CFF01_11195 CDS
T05400
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smav
Shewanella marisflavi
Pathway
smav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFF01_11195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_11195
Enzymes [BR:
smav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFF01_11195
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFF01_11195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASJ97106
UniProt:
A0AAC9TZU8
LinkDB
All DBs
Position
2565252..2568734
Genome browser
AA seq
1160 aa
AA seq
DB search
MNAFSVLTPPKVKGVKSPQTLSQLTGAAQAISLAKLCGQHDGLTLVVTPDTPSALRLEAE
LSYLLSPSSIPVLLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSATQSLVIVPMSTLMV
KLPPQSFLTGNVLLLSKGDNYPLEAVRSKLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMG
SQTPYRIELFDDEVESIRQFDPETQRSSGEIDAIRLLPAKEFPTHDEAIEGFRQRYRRQF
EVVVKEPESIYQMVSRKVMPAGIESYLPLFFDETASLFDYLPSGCQLVEIGELEGAAKSH
LQEVHQRYENRRVDPLRPLLPPKDLYLLTEQVFEAFKQLPRFLIKGNDYAGTSVPAKLDA
LPDVAANHKLKQPLLALKTFADSGTPILFCVESEGRREALLDLLAKIEIKPVLLDHIDTF
AQQPQPFGLIVAPLAQGAIYHPKKGPHWALICETELFGQRIAQQRRRDKQRQVSQDALIK
DLAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQY
SIGADDAPQLNKLGNESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQ
FAGSFPFEETVDQETAIDAVLTDMCNPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV
AILVPTTLLAQQHYENFKDRFADWPIKIEVMSRFKTAKEQQTVLKQLELGQVDIVIGTHK
LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEAL
LPEARVITAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPTANTIVIERADNFG
LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALL
PEDYVGDVNIRLSLYKRIANCSSSQALDELKVELIDRFGLLPQATKNLLEISLFKHQATA
LGIAKIEMHAKGGSLEFNDDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRL
DLLSLIISQLMQHRLGEPRA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttttccgttctcaccccaccgaaagtcaaaggggttaagtcaccccaaacc
ctgagccaactgacaggtgccgcccaggccatcagtctggcgaagctatgcgggcaacat
gacggtctcaccttagtcgtgacgccagacacgcctagcgccctgagactcgaggcggag
ctaagctacctgctgtcgccaagttcgatacctgtgttgctctttcccgatcgagaaacc
ctgccctatgacagcttttcaccccatcaggatctggtatctcagcgcttagagactctg
tcgcgtattcccagtgcaactcagagcctagtcatagtgccgatgagcaccctgatggtg
aaattgccgccgcagtcgtttttaaccggcaatgttctgctgcttagcaagggggataac
tatcccttagaagccgttcgtagcaaactggtaaacacaggctaccatcatgtcgaacag
gtctatgaacatggtgagttcgccgttcgcggctcaattatcgacctctttcccatggga
tcccagaccccttatcgtatcgagctgtttgacgatgaagtggagtctatccgccagttc
gatccggaaacccagcgctccagcggtgaaatcgatgctatccgtctactgccggccaag
gagtttcccacccatgacgaggctatagagggattccgtcagcgctatcgccgccagttc
gaggtggttgtcaaggaacccgagtccatctatcagatggtcagtcgtaaggtgatgccg
gcgggcattgagagttatctgccgctattttttgatgaaaccgccagcctgttcgattac
ctcccctcaggttgtcagttggtggagataggcgaattagagggcgccgccaagagccac
ctgcaagaagtgcatcagcgctatgaaaatcgccgagtcgatcccttaaggccactgctg
ccccctaaagatctctatctgctcaccgagcaagtcttcgaggcctttaagcaactgccg
cgttttttgattaaaggcaatgattatgcgggcaccagcgtgccggccaagctcgatgcc
ctgcctgacgtggccgccaatcataaattaaagcagccgctgctcgccctgaaaacattt
gccgacagcggcacgccgatattgttttgcgtggaatctgaaggtcgacgcgaagcgcta
ctagatctactggccaagattgaaattaaaccagtccttttggatcacatagataccttt
gcccagcagccacagccatttggcttgattgtcgcgccgctggcgcagggcgccatctat
caccccaagaaaggccctcactgggcgctgatttgtgagactgagctgtttggtcagcgc
atcgcccagcagcgacgtcgcgataaacaacgtcaagttagccaagatgcgctcattaag
gatctggccgagctaaaggtgggtcagcctatcgtccatctggatcacggcgtcgcgctc
tatcagggcctggaaaccttggacacaggcggcttggtcgccgaataccttaaattagaa
tatgccggtggtgacaagctctatgtacctgtcgcctcgctcaacctgatcagccaatac
agcataggcgcagatgatgcgccccagctcaataaactaggcaatgaaagctggactaag
gccaagcgtaaggcaatagagaagatccgcgacgttgcggctgaactgctggatgtctat
gccagacgccaggctcgcccaggtgaagcctgccgactggatcgcgaagagtatgctcaa
tttgccggcagcttcccatttgaagaaaccgtggatcaggaaaccgccatagatgccgtc
ctcaccgacatgtgcaaccccatctcgatggacagacttgtgtgtggcgatgtgggattt
ggtaagacagaggtcgccatgcgcgccgcctttgtggcggtcaatgacggtaaacaggta
gcgatactcgtccccactaccttgctcgcgcaacagcactatgaaaacttcaaagacagg
tttgctgactggccaattaaaattgaggtgatgtctcgctttaagaccgctaaagagcag
caaaccgttctcaagcaattagaacttggtcaagtcgatattgtgatcggcacccataag
ttgctgcagtccgaggctaaatttgaaaatctcggcctattgatcatcgatgaagaacac
agattcggtgtgcgccagaaagagaagatcaaggcgctacgcgccaatatcgacattctc
accctgaccgccacgcccatccctagaaccctcaacatggcgatgtctgggatgcgagat
ctctccataatcgccacgccaccggccaaacgcctggcggtcaaaacctttgtgcgcgaa
tatgacgatgccacggtgcgcgaagccttattgcgtgaaatcttaaggggcggccaggtt
tactttttgcacaacagcgtcgagaccatagagaaacgcgcccgtgaaattgaggctttg
ctacccgaggcgcgagtcatcaccgcccatggtcagatgcgcgagcgcgatctggaaaag
gtgatgtcagacttctatcaccagaaatacaatgtattggtctgcactaccatcatagaa
accggtatcgatgtgccaacggccaacactattgttatcgagcgggccgacaacttcggc
ctggctcagctgcatcagcttaggggccgcgtaggtcgctcgcaccatcaggcgtacgcc
tatctgatgacgcctcatcctaagcggatgaccaaggatgccattaagcgacttgaggcc
attggtgcccttgaagatctcggcgcgggctttatgctggccacccaagatcttgagata
cgcggcgccggtgaacttcttggcgacgagcagagcggccacatctctaagatcggcttt
acgctctatatggagatgctcgaagatgcggtaaagtcccttaaagaaggcaaagagccc
tcgctggatcaaatgttaaggggccagtgtgaaatcgacctgcgcatcccggccttgctg
ccggaagattatgtgggcgatgtgaatatacgcttatctctctataaacgtatcgccaat
tgcagtagctctcaggcgctggacgaactcaaagtggagttgattgaccgtttcggccta
ctgccgcaagccaccaagaacttgctcgagatctccctgtttaaacatcaggccacggct
cttggcatcgccaagatcgagatgcacgccaaaggcggtagcttggagtttaatgatgat
cactgcgtcgatcctggctttattatcggcttattacagagccagccacaaaattatcgt
atggacggcccaagtaagttaaaattcctgatgccgacagagacagacaaggataggcta
gacctcttgtcgctgatcatctctcaactaatgcaacatcgccttggagaaccgcgtgct
taa
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