Shewanella marisflavi: CFF01_12110
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Entry
CFF01_12110 CDS
T05400
Name
(GenBank) alcohol dehydrogenase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
smav
Shewanella marisflavi
Pathway
smav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CFF01_12110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smav03000
]
CFF01_12110
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_12110
Enzymes [BR:
smav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
CFF01_12110
Transcription factors [BR:
smav03000
]
Prokaryotic type
Helix-turn-helix
AraC family
CFF01_12110
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CFF01_12110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
ASJ97271
UniProt:
A0AAC9U072
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All DBs
Position
complement(2750944..2752458)
Genome browser
AA seq
504 aa
AA seq
DB search
MLAKSGQGVLHDPVKAEQYRIARLSRDARFDGLFFVGVFSTGIYCRPICPAVPANEANVR
YFADAISAAQAGLRPCLRCRPDSAPGSNPWLGTQTSLNRALNLINAGVLAGPQAISMSAL
AERLGIGERYLRQLFQQSLGTSPKQYALYQQLMFAKQLLHQTQMPITQVAFAAGFNSVRR
FNEIFREQLQLTPSEIRKTGAKAPSAKQGLTLKLAYRPPYDWTHLRDFYTQRMVPEMEWI
DEQSYGRSFTLNGVRGHFTAKHSEEEACFYVDIHLARAEDLRELKGIVSHIRRLLDLDAE
PLTIGDRLSGLGAALPKVQAGMRIPGVWSPFEAACRAILGQQVSVTQAVKLLGQLVADYG
ETVTLGERTLRLFPQPEQLTGASLEGLKMPGVRKEAIRALATFVAKAPEADIESWLQIKG
IGPWTLDYVRLRGLSLPDVLLSSDLVVKQQLLLNSPGSWPRQACEDPKAVKKQAQKYYQE
LSHQLAQEVAPWGSYLTLQLWNQQ
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgctagccaagtcaggccagggcgtgctacatgatcccgtcaaagcggagcaataccga
attgctcgtttgtcccgagatgccagattcgatgggcttttctttgtcggtgtcttctcc
accgggatctattgtcgacctatctgtccggctgtgcccgccaatgaggctaatgtcagg
tatttcgctgatgctatctcggcggcgcaggctgggctaagaccctgcttacgttgccga
cccgacagtgcccccggttccaacccttggcttggtacgcagacgagtcttaatcgcgcg
ctcaatttgattaatgccggcgtgttagctgggccgcaggcgatctcaatgagcgcactg
gccgagcgtttaggcataggcgagcgttatctacgccagctgtttcagcaatccttagga
acctctcccaagcaatatgccctctatcagcagttgatgtttgccaaacagttgctgcat
cagactcagatgccgatcactcaagtcgcttttgccgctgggtttaatagtgtcagacgt
tttaatgagatctttcgagagcagctgcaattgactccgagcgagatccgcaaaactgga
gcaaaggcgccgtcggctaaacagggactgaccttaaaacttgcctatcggccgccctat
gactggacgcatctcagggatttctacacccagagaatggttccagagatggaatggatt
gatgagcagagctatgggcgcagctttacactgaatggcgttagggggcatttcaccgcc
aaacacagtgaagaggaggcctgcttttatgtggacattcatctggcaagggcggaagat
ctcagggagttaaaagggattgtcagccatattcgtcgcctattagatctcgacgcggag
cccctcaccataggcgatagactgagcggcttaggggctgccttgcccaaggtacaagcc
ggaatgcgtattcccggtgtctggtcaccctttgaggcagcgtgccgagccatattgggt
caacaggtgagcgtcacccaggcggttaagctgttgggacaactggtggccgactatggc
gagacggtaaccttgggtgagcgcacactacgcctgtttccgcagccagagcaactaact
ggtgccagcctggaagggctgaagatgccgggagtgcgaaaagaggcgattcgggcgctg
gcgacatttgtggctaaagcccccgaggcggatatcgagtcctggctgcagataaaaggc
attggcccctggacattggattatgtgcgcctgcgcgggctgagcctgcctgatgtgcta
cttagtagcgatctcgtggtcaaacagcagcttttgctgaactcgcctgggtcatggccg
aggcaagcgtgtgaagaccctaaggcggtaaaaaaacaagctcagaaatattatcaagag
ctgagtcatcaattagcacaagaggttgcgccctggggcagctatctcaccctgcaacta
tggaatcaacaatga
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