Shewanella marisflavi: CFF01_12590
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Entry
CFF01_12590 CDS
T05400
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
smav
Shewanella marisflavi
Pathway
smav02020
Two-component system
smav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CFF01_12590
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFF01_12590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smav03021
]
CFF01_12590
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
smav02035
]
CFF01_12590
Transcription machinery [BR:
smav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFF01_12590
Bacterial motility proteins [BR:
smav02035
]
Flagellar system
Flagellar assembly proteins
Stator
CFF01_12590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_23
CT_C_D
Motif
Other DBs
NCBI-ProteinID:
ASJ97349
UniProt:
A0AAC9U1I2
LinkDB
All DBs
Position
complement(2847557..2848276)
Genome browser
AA seq
239 aa
AA seq
DB search
MSKAAAYTCLDNKASIVEQYAPLVKRIAHHLLARLPASVQLDDLIQAGMMGLLEASTKFD
GSKGAKFETFAGIRIRGSMLDEIRRGDWVPRSVHRNQRRVAQVIDELEQELGRDAKDNEI
ADRLDMTLDEYHHILNDVSVGKVVGIEDLGVSVDVVRDEDDHQDDAFEALAETQFHEALV
EAIKLLPERDGLVLSLYYDEALNLKEIGAVLDVSESRVSQIHSQAMLRLKAKLKHWTKI
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaagccgctgcgtatacttgtttagataacaaagcttctattgtcgaacagtat
gcaccgttggttaaaaggattgctcaccatttacttgctcgtctgcccgcttcggtgcaa
ttggatgatcttatacaagcaggtatgatgggcctgcttgaggcctcaaccaagttcgac
ggcagcaagggcgccaagtttgaaacctttgctggtattcgtatccgtggctccatgttg
gatgagattcgtcgtggtgactgggtgcccaggtcagtacatcgtaatcagagacgtgtt
gcccaggtgatagatgagctagaacaagagcttgggcgagatgcaaaagacaatgaaatt
gcagatcgacttgatatgacgctcgatgagtaccatcatattcttaatgatgtttctgtc
gggaaagtagttggaattgaagatcttggtgtatcggtcgatgtagtaagagacgaagac
gatcatcaagatgatgcttttgaagcactggcagagacacagtttcatgaggcccttgtg
gaggcgattaagttactgccagaaagagatggattagttttgtcgttatattatgacgaa
gcattaaatttaaaagagatcggtgccgtacttgatgtcagcgaatccagagttagccag
attcatagccaggcgatgctcagacttaaagcgaaactcaagcattggaccaaaatataa
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