Shewanella marisflavi: CFF01_13985
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Entry
CFF01_13985 CDS
T05400
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
smav
Shewanella marisflavi
Pathway
smav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CFF01_13985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_13985
Enzymes [BR:
smav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
CFF01_13985
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CFF01_13985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
RecT
Motif
Other DBs
NCBI-ProteinID:
ASJ97597
UniProt:
A0AAC9XP76
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All DBs
Position
3151494..3152351
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AA seq
285 aa
AA seq
DB search
MSESHWVGAHVSAAGGIANAPLNAQKIGANAFALFTKNQRRWQAAPLSQEQIRDFKTNCQ
QANIKPEAILPHDSYLINLGHPDEAQLQRSREAFLDEMQRCEQMGLKLLNFHPGSHLNKI
GIDDCLARISESINLALDKTQDVSAIIENTAGQGSNLGHSFEQLAQIIDKVEDKSRVGVC
IDTCHMFAAGYDLTTQAACEESFKQFDAIVGNRYLKAMHLNDSKTPLNSRVDRHHSLGAG
YIGMQAFSFIMQHPATRHIPLILETIEPEIWPQEINWLRSQAKSL
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaagccattgggttggtgcccatgttagcgccgccggcggtatcgccaatgca
ccactaaacgcacagaagatcggggccaacgcctttgctctgtttactaaaaaccaaaga
cgttggcaggcggctcctctaagccaggaacagatccgtgactttaaaaccaactgccaa
caggccaatatcaaacccgaagccatactgccccatgacagttacctgattaacttaggc
caccctgatgaggcccaactgcagcgctcaagagaagcctttttagatgagatgcagcgc
tgtgagcagatggggcttaagctgcttaactttcatcctggcagtcatctcaacaagata
ggaatagatgattgtctcgctcggatcagtgagtcgataaacctggcactggacaaaacc
caagacgtaagtgccatcattgaaaataccgcaggtcaagggtcaaacctgggccatagc
tttgagcaattggcgcagatcatcgataaggtcgaagataaatcccgtgtgggtgtttgt
atcgacacctgccacatgtttgccgcaggctatgatctaaccacccaagccgcctgcgaa
gagagcttcaagcagttcgacgccatagtgggtaaccgctatcttaaggcgatgcatctg
aacgacagcaagacgccgcttaacagtcgagtcgacaggcaccactcactcggcgccggt
tatataggcatgcaagcctttagcttcatcatgcagcacccggccactcgccatattcca
ctcatattggaaaccatagagccggagatctggccccaggagatcaactggctacgaagt
caggccaagtcattgtaa
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