Shewanella marisflavi: CFF01_14225
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Entry
CFF01_14225 CDS
T05400
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
smav
Shewanella marisflavi
Pathway
smav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFF01_14225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smav03019
]
CFF01_14225
Messenger RNA biogenesis [BR:
smav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFF01_14225
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
Nudt16-like
NUDIX_4
SAMP2
Motif
Other DBs
NCBI-ProteinID:
ASJ97642
UniProt:
A0AAC9XPA4
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Position
complement(3202950..3203474)
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AA seq
174 aa
AA seq
DB search
MIDSDGFRANVGIIICNRFGQVMWARRFGQHSWQFPQGGVDEGESAEQAMYRELYEEVGL
KPEHVQVLTSTRSWLRYRLPKRLIRQDSKPLCIGQKQKWFLLQLKSQESAIDLAATGHPE
FDDWRWVSYWYPVRQVVSFKRDVYRKVMKEFAPTTLAFQAQENTHSGRRRGRRR
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
gtgattgatagtgacggctttcgtgcaaatgtaggcatcattatctgtaatcgctttggg
caggtgatgtgggccagacgctttggtcaacattcctggcaatttccgcaaggtggcgtg
gatgaaggcgaaagtgccgaacaagccatgtatcgggagttgtatgaagaggttgggtta
aagcctgagcatgtacaggtgttaacctcaactcgttcctggttgcgttatagattacca
aaacggttaattaggcaagacagtaaacccttatgtatcggacagaagcagaagtggttt
ttattacaattaaagagtcaggagtcggctatcgatctggcggccacggggcatcctgag
tttgatgattggcgttgggtcagttactggtatcctgtcaggcaggtggtatcctttaaa
cgtgatgtttaccgcaaggtgatgaaagagtttgcgccgacgacgttagcgtttcaggcg
caggaaaatacccatagtggcagaaggcgaggtcgccgcaggtaa
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