Shewanella marisflavi: CFF01_14430
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Entry
CFF01_14430 CDS
T05400
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
smav
Shewanella marisflavi
Pathway
smav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFF01_14430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smav03021
]
CFF01_14430
Transcription machinery [BR:
smav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFF01_14430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
TMPIT
FAP206
Motif
Other DBs
NCBI-ProteinID:
ASJ97679
UniProt:
A0AAC9U257
LinkDB
All DBs
Position
3248483..3250330
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AA seq
615 aa
AA seq
DB search
MISMEQTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYE
QAPDADEIMMSEDSTDEDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGINTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDIISGFVDPNAEDVAPTA
THIGSELSDDDLDDEDDDEDEDDDSDEDDSPKGPDPEEARERFTQLRQAHENALKVIEQK
GREHPESTAALFQIGEIFKEFRLVPKQFDRLVKSMREMMDKVRVQERLIMKLCVEQAKMP
KKNFVKVYTTNESSIEWFNDEIAAKKPYSEGLQMVAEDVQRCRAKLDAIENETGLAIAAI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
SPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGE
SLKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEILKSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgatatctatggagcagactccgcagtcgcaacttaaattgttgcttgccaaaggtaaa
gagcaaggttatttaacctatgcagaagtgaatgatcacttgcctgcagatatggtcgat
tcagatcagatcgaagatattatccagatgattaatgacatgggtattcgcgtctatgag
caggcgccggatgccgatgagatcatgatgtctgaagacagcaccgatgaagatgctgcc
gaagaagctgccgcagcactggctacggttgaagctgagctagggcgtaccacagatccc
gtacgtatgtacatgcgtgaaatgggtacggttgaacttctgacccgcgaaggcgaaatc
gttattgccaagcgaattgaagaagggatcaacacggttcaagcctctgtagccgaatat
cctcaagcgatcgccatgatccttgagcaatatgatcgctatgaagctgaagaagtcaga
ctatcagacattatctctggatttgttgaccccaacgctgaagatgttgccccaacggcc
actcacatcggctcggaactttcggatgatgatctcgacgacgaagacgatgacgaagac
gaagatgacgatagcgatgaagacgattcgccaaagggaccggatccagaagaggcgcga
gagcgtttcactcagctacgccaggcccatgaaaacgccctgaaagtgattgagcagaaa
ggacgcgagcaccctgaatcgaccgcagccctattccagattggtgaaatcttcaaagag
ttccgcctggtacccaagcagtttgaccgcttagttaagagcatgcgtgaaatgatggat
aaggtgcgtgttcaagagcgtctcatcatgaagctatgtgttgaacaagctaagatgcca
aagaaaaacttcgttaaggtttacaccactaacgaaagcagcatcgaatggttcaacgac
gagatcgcggccaagaagccttattctgaaggcctgcagatggtggcagaagatgtacaa
cgctgccgtgctaaactcgatgctatcgagaatgaaaccggtctggcaattgcggctatt
aaagatatcaaccgtcgtatgtctatcggtgaagccaaggctcgccgcgctaagaaagag
atggttgaagctaacctgcgtctggttatttctatcgccaagaagtacaccaaccgtggt
ctgcaattcctggatctgatccaggaaggtaacatcggtctgatgaaggcggtggataag
tttgaataccgtcgtggttacaagttctcgacctatgcgacttggtggatccgtcaggcg
atcacgcgttcgattgccgaccaggctagaaccattcgtattccggttcatatgatcgaa
accatcaacaaacttaaccgtatctctcgtcagatgctgcaagagatggggcgcgagcct
tcacctgaagagctggccgaacgtatgttgatgccggaagacaagattcgcaaggtgcta
aagattgccaaagagcctatctcaatggaaacccctatcggcgatgatgaagattcgcat
ttaggtgattttatcgaggataccaccctcgagctgccattagacagcgctacaggtgag
agtctgaagaatgcgacccacgaagtgcttgccggcctaacggctcgcgaagctaaagta
ctgcgtatgcgtttcggtatcgacatgaacacagaccataccctagaggaagtgggcaag
cagttcgatgtgacccgtgagcgtattcgtcagattgaagctaaggcactgcgtaagtta
cgtcatccttctcgctcagagatccttaagtctttcttggatgaataa
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