Shewanella marisflavi: CFF01_16190
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Entry
CFF01_16190 CDS
T05400
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smav
Shewanella marisflavi
Pathway
smav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFF01_16190 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smav03019
]
CFF01_16190 (rnr)
03016 Transfer RNA biogenesis [BR:
smav03016
]
CFF01_16190 (rnr)
Enzymes [BR:
smav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CFF01_16190 (rnr)
Messenger RNA biogenesis [BR:
smav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFF01_16190 (rnr)
Transfer RNA biogenesis [BR:
smav03016
]
Prokaryotic type
tRNA degradation factors
CFF01_16190 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ASJ98004
UniProt:
A0AAC9XPM5
LinkDB
All DBs
Position
complement(3680256..3682724)
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AA seq
822 aa
AA seq
DB search
MIKDPHLKREQEKYDNPIPSREYILDYLRSQQSPLNREKIAQALKISDEEQLEALRRRLR
AMERDGELVFTRGQAYGLPERMDLLSGMVLGHKDGFGFLKLDEGGDDLFINNRDMLMYFH
GDKVLAQKAGVDRKGRREARIVRLTHERTAPLVGRFHLDSGMAFVIADDKRITQEILIPD
GDRNGARQGDVVVVELTRRPGRYMKAAGKVTEVLGKEMAPGMEIEIALRNYDLPHTWSSL
IEKKLRKIPDEVTEEDKQGRVDLRKLPLVTIDGEDARDFDDAVYAETKKSGGWRLWVAIA
DVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTIS
ATGKLSGYKFYPAVMHSHARLTYTQVADMLEGGEVSDELKPIFPHLQTLQSLYLTLDETR
AQRGAIAFETTETQFIFNADRKIDRIEPRTRNQAHKIIEECMIMANVAAAKFVQKHKGEV
LYRVHEAPSEQKLTNFKDFLKERGLTMGGGLEPEPADYQALMEQVIDRPDAELIQVMLLR
SMRQATYTPDNEGHFGLALEQYSHFTSPIRRYPDLILHRVIRYLLAKERGEGNDKWTPDG
GYHYQIEELDLLGEECSTTERRADEATRDVSDWLKCEFMRDHVGDTFEAVIASVTHFGMF
VRLSDLFIDGLVHISTLGGDYYHYDNMRQRLVGEATGQVYQIGDPVTVKVAAVNLDDRQI
DLMMVGDDGKAPRPRRGKKPLTARERVNLEGAKVGRKGGKEDDKPSGKRRSGKRSDAKPG
AGKPGAGKAGAAKPKSGAPKSTAKAKPSAKKRKAVKKRSSKK
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatccgcatttaaagcgtgaacaagagaagtacgacaaccccattcctagt
cgtgagtatattttagattacttacgctcacagcaatcacccctcaatcgtgaaaaaatt
gcccaggcgctcaagatcagcgatgaagagcagctagaagccttgcgccgccgcctcagg
gcgatggagcgtgatggcgagctggtctttacccgtggtcaagcctatggcttacccgag
cgtatggatctgctaagtggcatggtattgggccacaaggatggttttggcttccttaaa
ctcgatgaagggggcgatgacctctttatcaacaaccgtgacatgctgatgtattttcac
ggcgacaaggtgcttgctcaaaaagccggtgtcgatcgtaagggccgccgcgaggcgcgc
atcgtacgtctgacccatgagcgcaccgcgcctctggtggggcgtttccacctggattct
ggcatggccttcgtgattgcagacgacaagcgcatcacccaggagatcctgatccccgat
ggcgatcgcaatggtgctcgtcagggcgatgtcgtggtggttgaactcacccgccgtcct
ggccgctacatgaaggctgccggtaaggtcaccgaggtgctgggtaaagagatggcgccg
ggcatggagattgagattgccctgcgcaactacgatctgccccatacctggtcaagcctg
atcgagaagaagctgcgcaagatccctgatgaagtgaccgaagaggataaacaagggcgg
gttgacctgcgcaagttacctctggtcaccatagatggtgaagatgcgcgtgatttcgat
gatgccgtctatgccgagaccaagaagagcggcggttggcgcctgtgggtggccattgcc
gatgtcagccattatgtgcgcaccgactcggcgctggacaaagaagcccgcgcccgcggt
aactcagtctactttccgtctcaggtgatccccatgttaccggagaaattgtcgaacggt
ctctgttcgctcaatcctggagtcgacaggctctgtatggtcgccgagatgaccatttcg
gcaacgggcaagctgtcgggctataagttttatccagccgtgatgcactctcatgcacgt
ctgacttacacccaggtggcggatatgctcgaaggtggcgaggtgagtgatgagcttaag
ccaatcttcccgcacctgcagacattgcagtcgctctatctgactttagatgagacacgc
gcgcagcgcggtgctatcgcctttgaaaccactgagacccagtttattttcaatgccgat
cgcaagatagatcgcatcgagccccgtacccgcaatcaggcccataagatcatcgaagag
tgtatgatcatggccaatgtggcggcggctaagtttgtgcaaaagcataagggtgaagtg
ctctaccgggtgcatgaagcgccgtcagagcagaagctgaccaactttaaagatttcctc
aaggagcgcggcctcaccatgggcggtggtcttgagcctgagccggccgattatcaggcg
ctaatggagcaggtgatcgacaggcctgatgccgagttgattcaggtgatgttgctgcgc
tctatgcgtcaggcaacttacaccccggataacgagggtcactttggcctggcgctggag
cagtattcgcactttacctcgccgattcgtcgttaccccgatttgattctgcacagggtg
atccgttacctgctggccaaggagcgtggcgagggcaatgacaagtggacgcctgatggt
ggttaccactatcagatcgaagagcttgatctgctgggtgaagagtgttccaccacagag
cgacgcgccgatgaggcgacccgtgatgtgagcgattggcttaagtgtgagtttatgcgt
gaccatgtgggcgacacctttgaggccgttatcgcctcggtcacccacttcggcatgttt
gtgcgcctaagcgatctctttatcgatggtctggtgcatatctcgaccctgggcggcgac
tattatcactacgataatatgcgtcagcgtctggtgggtgaggccacggggcaggtgtat
cagataggcgatcccgtcacggttaaggtggcggcggtgaatctggacgaccgtcagatc
gatctcatgatggtgggcgacgatggtaaagcacctcgaccacgccggggcaagaagccc
ttgaccgctcgtgagcgagtcaatctcgaaggcgccaaggttggccgtaagggcggcaaa
gaagatgacaagccaagcggtaagcgccgctctggcaaacgcagcgacgctaagcccgga
gcaggtaagccaggagccggcaaggcgggggcggccaagccaaagagcggtgccccaaaa
agcacagctaaggctaagccaagcgccaaaaagcgtaaagcggttaaaaaacgcagtagt
aagaaataa
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