Shewanella marisflavi: CFF01_16675
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Entry
CFF01_16675 CDS
T05400
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
smav
Shewanella marisflavi
Pathway
smav03420
Nucleotide excision repair
smav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFF01_16675
03430 Mismatch repair
CFF01_16675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_16675
Enzymes [BR:
smav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFF01_16675
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFF01_16675
MMR (mismatch excision repair)
Other MMR factors
CFF01_16675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASJ98096
UniProt:
A0AAC9U1W7
LinkDB
All DBs
Position
complement(3781755..3783920)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVSGSSMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQL
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHILEHYQERFKNILVDEFQDTNAIQYAWIRVLAGSS
ANVMIVGDDDQSIYGWRGAQVENLHKFLQDFPAAQTIRLEQNYRSSANILNASNELIANN
PDRLGKKLWTEDQAGEKIGLYCAFNEMDEARFIVGRIMDWQDMGGNLSDCAILYRSNAQS
RVLEEALLHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERIINTPARGIGG
RTLEILRSTARQQELTLWQTCLRLLDEKVLSGRAANAVRGFMDLIVTLQQETDEQSLHRM
TDHVIQTSGLKAMYEAEKGEKARARVENLEELVTAARTFVMPEDLEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSQMAMDEGDRLDEERRLCY
VGMTRAMKQLYITYAESRRIYGRENYARPSRFIKEIPGDYVQEIRMKTSVSAPASSNRFS
QAQASFNDSGFNLGQRVNHPKFGEGTVTNFEGSGAQARVQVDFLDVGSKWLVVAYARLET
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactcgacggcttaaacgataaacagcgcgaggccgtcggcgca
ccacaatctagcatgctggtgttggcaggcgcgggcagtggtaagacccgggtgctgaca
caccgtatcgcctggttgatgcaggtagagcagcagagtccctattctatcttggcggtg
acctttaccaataaggctgcggccgagatgcgcgagcgtgtggagaaggtcagcggcagc
agtatgggccgtatgtggataggtaccttccacggtttggcgcatcgtctgctgcgtacc
cactatcaagatgccaacttgccccagagtttccaaattctcgactcagacgatcagctc
aggctgatcaagcggatcctcaagagcctgaatctggatgagaagcagtatccgcctcgt
caggcacagggctatatcaatggtaaaaaagatcaggggctaagacccaagcatatcgat
gccggtggctttcccatagagcagaacctgctgaagatctatcaggtgtatcaggagtct
tgcgatcgtgcaggactggtggactttgccgagatcttattaagagcccatgagctgtgg
cttaacaagccccatattctggagcattatcaagaacgatttaaaaacatcttggtggac
gagtttcaggataccaacgctattcaatatgcctggatccgcgtgctggcgggcagcagt
gccaatgtgatgatcgttggtgacgacgaccagtctatctacggctggcgtggtgcccag
gtggagaacctgcacaagtttctacaggacttcccggcggctcagaccatacgtctggag
cagaactaccgttcttcggccaacatccttaatgcctccaacgagctgatcgccaacaac
ccagatagactgggcaagaagctgtggaccgaagatcaggcgggggagaagattggtctc
tattgcgccttcaacgagatggatgaggcgcgctttatcgtcggccgcatcatggattgg
caggatatgggcggtaacctgagcgactgcgccatcctctatcgctctaacgcccagtcg
cgggtgttggaagaggccttgctgcataagggaatggcttatcgcatctatggcggtctg
cgcttcttcgagcgtcaggagatcaaggatgccatgggctacctgcgcctgatcagcaat
aaaaatgatgatgccgccttcgagcgtattatcaatacgccggcccgtggcataggtgga
cgaaccttagagatcctgcgcagcacggcgcgtcagcaggaactgaccctgtggcagacc
tgtctgcgtctgctcgatgagaaggtgctctcgggtcgggccgccaacgcggtgcgcggc
tttatggacctgattgtgaccctacagcaggaaacagacgagcagtcgctgcatcgcatg
acagatcatgtgattcaaacctcagggctcaaggccatgtatgaggcggagaagggcgag
aaggcccgtgccagggtggaaaacttagaggaactggtcactgcggcgcgaacctttgtg
atgccagaagatctcgaagatatgggcgagctcaacgccttcctatcccatgcggcgctc
gaagccggtgaggggcaagcagatgcctttaccgatgcggtgcagctgatgaccctgcac
tcggccaagggcttggagttccctatggtctttatggcgggtgtcgaggaggggattttc
ccgagtcagatggcaatggatgagggcgatagactcgatgaagagcgccgcctttgctac
gtgggcatgacccgcgccatgaaacagctctatattacctacgccgaatcacgccgtatt
tacggccgggaaaactatgcccgtccgtcacgtttcatcaaggagatccctggtgattac
gtgcaggagatccgcatgaagaccagtgtgtcggcaccggccagtagtaatagattcagt
caggcgcaggcctcgttcaatgattcaggttttaatctgggtcagcgagtgaaccatcct
aagtttggtgaaggcactgtgactaacttcgaaggaagcggtgcccaggccagagttcag
gtggattttctcgatgtcggcagcaagtggctggtggtcgcctatgcaagattggaaacc
ctgtaa
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