Shewanella marisflavi: CFF01_17885
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Entry
CFF01_17885 CDS
T05400
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
smav
Shewanella marisflavi
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smav03021
]
CFF01_17885 (rpoH)
Transcription machinery [BR:
smav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFF01_17885 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Fe_dep_repress
2Fe-2S_thioredx
UCR_14kD
GntR
Motif
Other DBs
NCBI-ProteinID:
ASJ98310
UniProt:
A0AAC9U0J4
LinkDB
All DBs
Position
complement(4060086..4060943)
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AA seq
285 aa
AA seq
DB search
MTNQTQSMALMVPQSSSSIEAYIHSAHNIPMLEANEEYELAKRLQETGDIQAAKQLIMSH
LRFVIHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNLRKAKKRLGWFSDEEVTMVAENLGVSKSDVTEMESRMAA
QDPAFDLASDNDDDQDYAPVHYLEDHSSDIASQVENDNFEADNQTRLLAAIKTLDERSQH
ILQARWLDEEKTTLQELAATYQVSAERIRQLEKNAMNKLKGRMEM
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatcaaacgcaatcaatggcactaatggtacctcaaagcagcagtagcatagag
gcttatatccattctgcgcacaacattccaatgttggaggcgaatgaggaatatgagctg
gcgaagcgtctgcaggagaccggtgacattcaggctgcgaagcagttgattatgtctcat
cttcgtttcgtaattcatgtcgccaaaggttattcgggttatggtctgccacaggctgat
cttatccaagaaggtaatattggtttgatgaaggcggtaaaacgctttgatcccgatgtg
ggtgtgcgtcttgtctcgtttgccgtacattggattaaagccgagatccacgaatacgtg
ttgaaaaactggcgtatcgttaaggtcgcaaccaccaaggcacagcgcaagctgttcttc
aatctgcgaaaggccaagaagcgtttgggctggtttagcgatgaagaggtgaccatggtt
gccgaaaacctgggtgtatctaagagcgacgtgaccgaaatggagtcgcgtatggcagct
caggatcccgctttcgatctggctagcgataatgatgatgaccaagattatgcacctgtg
cattaccttgaggaccattcatcggacatcgcttctcaggtggaaaacgacaactttgaa
gccgataaccaaactcgtcttctggcggctatcaagacccttgatgagcgtagtcagcat
attctacaggcgcgttggttggacgaagagaagaccacgctgcaagagctggcggcaact
tatcaagtctctgccgaacgaatcaggcagcttgaaaagaacgccatgaataagcttaaa
ggccgcatggaaatgtaa
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