Shewanella marisflavi: CFF01_18395
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Entry
CFF01_18395 CDS
T05400
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
smav
Shewanella marisflavi
Pathway
smav03030
DNA replication
smav03410
Base excision repair
smav03420
Nucleotide excision repair
smav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFF01_18395
03410 Base excision repair
CFF01_18395
03420 Nucleotide excision repair
CFF01_18395
03440 Homologous recombination
CFF01_18395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smav03032
]
CFF01_18395
03400 DNA repair and recombination proteins [BR:
smav03400
]
CFF01_18395
Enzymes [BR:
smav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CFF01_18395
DNA replication proteins [BR:
smav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFF01_18395
DNA repair and recombination proteins [BR:
smav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CFF01_18395
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFF01_18395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ASJ98404
UniProt:
A0AAC9U321
LinkDB
All DBs
Position
4167060..4169810
Genome browser
AA seq
916 aa
AA seq
DB search
MPNIAENPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLKQYKPTQMAV
VFDAKGKTFRNEMYAEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLVCVPGVEADDVIGT
IARQASQEGRAVLISTGDKDMAQLVDEQITLINTMTNTILGPQEVSEKFGVGPELIIDLL
ALQGDKADNIPGLPGVGEKTALAMLNGVGGIKEILANPEKMPELGFRGAKTMPAKLAEHG
DMLQLSYELATIKCDVELEQDWHQLNIQDADRDELIKCYGEMEFKRWLAEVLDNKSAPEN
QDEADEAPAPQTVDTQYETILTWEAFDEWLKALTTAPLFALDTETTSLNYMEAKLVGLSF
AIEPGKAAYLPLAHDYADAPEQLDSEQVLAKLKPILEDAKILKVGQNLKYDMSILANVGI
TLRGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQISLET
AAPYAAEDADITLRLHQHLWPRLEKAGELASVFTDIELPLVSVLSQIERQGVLIDSMVLG
QQSEELARKIDELEQKAYEIAGEPFNLSSTKQLQALFFDKLGYPVLKKTPKGAPSTAEEV
LVELALDYPLPKIILEHRSLSKLKSTYTDKLPLMVDGKTSRVHTSYHQANAATGRLSSSE
PNLQNIPIRTEEGRRIRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDI
HRATAAEVFGVDFSEVTNEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQQYIDIYFK
RYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAA
DIIKKAMINIAQWIDQDTQGEITMIMQVHDELVFEVDADKAESLKLKVCELMAQAASLDV
ELLAEAGIGDNWEQAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatatcgctgaaaacccactcgtccttgtggatggttcttcctatctttaccgc
gcttactatgcaccgccgcatttgaccaactccaagggtgaagccacgggggccgtatat
ggcgtgatcaacatgctacgcagcctgctcaaacaatataaaccaacccagatggccgtg
gtcttcgatgccaaaggcaaaaccttccgcaatgagatgtatgccgaatacaaggctcat
cgaccgccgatgccggacgatcttcgcagccaaatcgaaccgctgcatcgtatcattcgc
gccctgggcctgcctttggtctgtgttcccggcgttgaagccgatgatgtcataggcacc
atcgctagacaggcgagccaagaaggccgcgccgtactgatcagcacgggcgataaggac
atggcgcaattggtggatgagcagatcaccctaatcaacaccatgaccaacaccatcctt
gggcctcaagaagtcagcgagaaatttggtgtcggcccagaactgattatcgacctatta
gcgctgcaaggcgataaggccgataacattcctggcctgccgggcgttggtgagaaaaca
gcgctggcaatgcttaatggcgtcggcggcattaaggagatcctcgccaatccagagaaa
atgccagaactcggctttagaggcgccaagaccatgccagccaaactcgccgaacatggc
gacatgctccaactctcctatgagctggcgaccatcaagtgtgatgtcgaactggaacaa
gactggcaccaactcaatattcaagacgccgatcgcgacgaactgatcaaatgctatggc
gaaatggaatttaaacgctggctagccgaggtgttagacaataaatcagcaccagaaaat
caagatgaggccgacgaagcgccggcgcctcaaaccgtggatactcagtacgaaaccatt
cttacctgggaagctttcgatgagtggctcaaggcgctgaccacagcgccgctgtttgcc
ctggatacagagaccaccagcctcaactatatggaggccaaactggtcgggctatctttt
gccatcgagccaggtaaagcagcttacctgccactggcacacgattatgccgatgcgcca
gaacagctcgacagtgagcaggtgctcgctaagctaaagccgatattggaagacgccaag
atacttaaagtcggccaaaaccttaagtatgacatgagcatactggcaaatgtcggcatc
acacttagaggtgtggccttcgataccatgctcgaatcctatgtgttcaattcggtcgcg
tctaagcacaatatggacgacctggcactgaagtatttaggccataagaacatcagcttt
gaggagatagcaggtaaaggggtaaaacagctgacctttaaccagatctcactggagacg
gccgcaccttacgccgccgaagatgccgatatcactcttagactgcaccagcacctctgg
ccaagattagagaaggcgggagaacttgccagtgtatttaccgacatagaactgcctctg
gtcagcgtcttgtcacaaattgagcgccaaggggtattgatcgatagcatggtactaggc
cagcaaagtgaagagctggcacgtaagatcgatgaacttgagcagaaggcctacgagata
gccggcgagccatttaacttaagttccaccaaacagctacaagccctcttcttcgataag
cttggctaccctgtgttgaaaaagacacctaaaggcgcaccatccaccgccgaagaggta
ttggtcgagctggcactggactatccgctgcctaagatcatcctggagcacagaagcctg
tctaagctcaagagcacctataccgacaagttgccactcatggtcgatggcaaaaccagc
cgggtacataccagctatcatcaggccaatgccgccacggggcgtctgtcatccagcgag
cctaacctgcagaatattcctatccgcaccgaagaaggacgccgcattcgccacgccttc
gtagcgccagaggggcgtaaaatcctcgccgccgactattcgcagattgaactcaggatc
atggcgcacctgtcgcaagacaaggggctacttaccgcctttgctgaaggtaaggatatt
catcgcgccaccgccgccgaagtgtttggtgtcgatttcagtgaagtcaccaacgagcag
cgtcgccgcgccaaggcggtgaacttcggtctcatctatggcatgtcggcctttggttta
gcacgccaactcgatattccacgtcacgaggcccagcaatatatcgacatctactttaag
cgctatcccggcgtgctcaagtatatggaggacacgcgtgccgccgctgccgaacagggc
tatgtgtctaccctttatggtcgcagactctatctaccggccatcaaggatagaaatgcc
atgcgccgtcaagcagctgagcgcgccgcaattaacgcccccatgcagggaaccgccgcc
gatatcatcaagaaagccatgatcaatattgctcagtggatcgaccaagatacccaaggg
gagatcactatgattatgcaagtacatgatgaattagtgtttgaggtcgacgccgacaaa
gccgagtcgcttaagctcaaggtatgtgagctgatggctcaggcagcctcactcgatgtc
gaattactggcggaggcgggcataggggataactgggaacaagctcactaa
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