Sulfurimonas marina: FJR03_01390
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Entry
FJR03_01390 CDS
T08627
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smax
Sulfurimonas marina
Pathway
smax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FJR03_01390 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smax03021
]
FJR03_01390 (rpoB)
03400 DNA repair and recombination proteins [BR:
smax03400
]
FJR03_01390 (rpoB)
Enzymes [BR:
smax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FJR03_01390 (rpoB)
Transcription machinery [BR:
smax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FJR03_01390 (rpoB)
DNA repair and recombination proteins [BR:
smax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FJR03_01390 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
INO80F
Motif
Other DBs
NCBI-ProteinID:
QOP40463
UniProt:
A0A7M3V9N0
LinkDB
All DBs
Position
251285..255430
Genome browser
AA seq
1381 aa
AA seq
DB search
MLNTLYSGNRLRVDFSKTPQEIEVPNLLQLQQSSYEKFLMLESKDRDASGIEKVFQSVFP
IHDAQNRLTVEYIGSEVTNPKYTVRECMERGLTYAVSLRMKTRLVLWDRDENTKEKLGVK
DIKEQSIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESTTASSKLIYTGQI
IPDRGSWLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKLFYPIQTIKIEDNN
FAIEFNPTDYSGRLGYDLVDTNGKTLVAAGKRLSAKKAQKFIEDGLAEVQYPIEVLLERY
LAEPIIDPETGEVLFDTMTHIDESKLKKMAEIGVTEFRIANDLAEGVDSSVINAFNADAD
SLKLLKQTEEIEDENDLAAIRIYKVMRPGEPVTKEAAHAFVNQLFFDPERYDLTQVGRMK
MNHKLGLNVPEYVTVLTHEDIIESVKYVIKVKNGQGHIDDRDHLGNRRIRAIGELLGNEL
HNGLVKMQKAIRDKLSTMSGPMNELMPHDLINSKMITSTIIEFFSGGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLASYAKVN
EHGFIEAPYKVMKDGEVTKEIVYLTATQEEGVMIAAASNALDENGQFVEELISVRQDGEI
LLRSPKDCQYADLSSSMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKAQAPMVGT
GVEKLVARDSWECVKAKRGGKVEKADAKHIYVMGEEDGEIFIDYYPLQKNLRTNQNTSFT
QKPIVNVGDIVEKGQIIADGPNMDQGELALGVNAMVAFMPWNGYNFEDAIVISEKLIRQD
AFTSVHIYEKEVEARELKHGVEEITRDIPNVRDDELAHLDESGIVKIGTQVKGGMILVGK
VSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSMEGVVVDIKVFTKKGYDKDPRAL
ELEKEERDHLEREHYDRLIMIDKEEMLRVTKLLTREPLVSDVKIGDKEYKAGDLINGDDL
AGINRFAMNNVVKSFSEEIQDQYNKTKNHFQKQKRLFRDEHEEKLSILEKDDILPNGVVK
YVKVYVATKRHLKVGDKMAGRHGNKGIVSNIVPEVDMPYMEDGRSVDVCLNPLGVPSRMN
IGQILEMHLGMAGRELGNQIQAQFETKQKDFLDNLRAKMIEVADIAGLMNAKETIGAMDD
EEFLKHARDWAKGVKFATPIFEGVNAVEFEKLYEAARMAEDGKVALYDGRTGEKLKERVN
VGYMYILKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGASAV
LKEMLTIKSDDVDGRVRAYKALTKGESVPASGIPETLFVLTKELQALALDVDIMDEVEDN
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacactttatattccggaaaccgtcttcgtgtagacttctctaaaactcctcaa
gaaatagaagtaccaaatctattacaacttcaacaaagttcatatgaaaaattcttaatg
ttagaatcaaaagatagagatgcaagtggaatcgaaaaagtattccaatcagtattccct
attcatgatgcacaaaacagattaactgtagaatacatcggttctgaagttactaatcct
aaatatactgtacgtgaatgtatggaaagaggacttacatatgcagtaagtcttagaatg
aaaacacgtttagtattatgggacagagatgaaaatactaaagagaaacttggtgtaaaa
gatattaaagaacaatctatttttgttcgtgatattcctttaatgacagacagaacatca
ttcattattaatggtgttgagcgtgttgttgtaaatcagttacaccgttcaccgggtgtt
atcttcaaagaggaagaatcaacaactgcaagttctaaacttatctatactggtcaaatt
attccagatcgtggttcatggttatactttgagtacgatccaaaagatatcctatacatg
agaatcaacaagcgccgtaaggttcctgtaacaattatgtttagagcattaggttactca
aaacaagatatcttaaaactgttctatccgattcaaacaattaaaattgaagataacaat
tttgcgatcgagtttaatccaactgattattctggacgtttaggatatgatctagttgac
actaacggaaaaacattagtagctgctggtaaaagattatctgctaaaaaagcacaaaaa
tttattgaagatggtttagcagaagttcaatatccaattgaagttttattagagcgttat
ttagctgaaccaattattgatccggaaactggtgaagtattatttgacactatgacacac
attgatgagtctaagttaaagaaaatggctgaaatcggtgtaacagaattcagaatcgct
aacgatttagctgaaggtgttgatagctcagttatcaatgcatttaatgctgatgctgat
tcacttaaacttctaaaacaaacagaagagattgaagatgaaaacgatttagcagcgatc
cgtatttacaaagtgatgcgtcctggtgagcctgtaactaaagaagcagctcatgcattc
gtaaatcaacttttctttgatcctgaaagatatgacttaactcaagttggtcgtatgaaa
atgaaccataaactaggtctaaatgtacctgagtatgtaacggttcttactcatgaagat
atcatcgagtctgtaaaatacgttatcaaagttaaaaatggtcaaggtcacatcgatgac
agagatcacttaggtaacagacgtattcgtgctatcggtgagcttttaggtaacgagtta
cacaacggtttagtaaaaatgcaaaaagctatccgtgataaattatctactatgagtgga
ccaatgaatgagctaatgcctcatgaccttatcaactctaagatgattacatcgactatt
attgagttcttctcaggcggtcaattatctcagtttatggaccaaactaacccattatct
gaggttactcacaaacgtcgtctatcagctcttggtgaaggtggtcttgttaaagagcgt
gccggattcgaagtgcgtgacgttcacccgactcactacggtcgtatctgtccaattgag
actccagagggtcaaaatattggtcttatcaatactttagcatcatatgcaaaagttaat
gagcatggtttcattgaagcaccgtacaaagtgatgaaagacggtgaagttacaaaagag
attgtatatctaacagctactcaagaagaaggtgtgatgatcgcagctgcttcaaatgca
ttagatgaaaacggtcaatttgtagaagaacttatctctgttcgtcaagatggtgagatc
ttattaagaagccctaaagattgtcaatatgctgacctttcatctagtatggttgttggt
gtagctgcttcacttattccattccttgagcacgatgatgccaaccgtgcacttatggga
tcgaacatgcagcgtcaagcagtgcctttattaaaagcacaagctccaatggttggaaca
ggtgttgagaaacttgtagcacgtgactcttgggaatgtgttaaagctaagcgtggcggt
aaagttgaaaaagctgatgctaaacatatctatgtaatgggtgaagaagatggtgagatt
tttatcgattactatccattacaaaagaacttaagaacgaaccaaaacacttctttcacg
caaaaacctatcgttaacgtaggtgatatagttgaaaaagggcaaattattgctgatggt
ccaaatatggatcaaggtgaacttgctcttggtgtaaatgcaatggttgctttcatgcct
tggaacggttataacttcgaggatgcgatcgttatttctgaaaagttaattcgtcaagat
gcatttacttcagtacatatctacgaaaaagaggttgaagctcgtgaacttaaacatggt
gttgaagagatcactcgtgacatccctaatgttcgtgatgatgaattagcacacttagat
gaatctggtattgttaagatcggtacacaagtaaaaggtggaatgatcttagttggtaag
gtttctccaaaaggtgaagttaaaccaactcctgaagagagacttttacgtgcaattttc
ggtgaaaaagctggtcacgttgtaaataaatctttatactgtccaccatctatggaaggt
gttgttgtagatattaaagtatttacgaaaaaaggttacgacaaagatcctcgtgcatta
gagcttgagaaagaagaacgtgatcatttagagcgtgagcactatgacagactaattatg
atcgataaagaagagatgttacgtgtaactaaacttcttactcgtgaaccattagtaagc
gatgtaaaaatcggtgataaagagtataaagccggagatttaatcaatggtgatgactta
gctggtatcaaccgttttgctatgaacaatgttgtaaaatctttctctgaagagattcaa
gaccagtacaacaaaacgaaaaaccatttccaaaagcaaaaacgtctatttagagatgag
catgaagaaaaactttctattttagaaaaagatgacatccttccaaacggtgttgtgaaa
tatgttaaagtttacgttgctactaaacgtcacctaaaagttggtgataaaatggcagga
cgtcacggaaataaaggtattgtttctaatatcgttcctgaagttgatatgccgtacatg
gaagatggacgttcagttgatgtatgtcttaacccactaggggtaccttctcgtatgaat
atcggtcagattttagagatgcaccttggtatggctggacgtgaactcggtaaccagatc
caagctcagtttgagacaaaacaaaaagatttcttagacaacttacgtgctaagatgatt
gaagttgctgacattgcaggtctaatgaatgcaaaagagacaatcggtgctatggatgat
gaagagtttttaaaacatgcacgtgactgggcaaaaggtgttaagttcgctacacctatc
tttgaaggtgtaaatgcagtagagtttgaaaaactttatgaagcagcacgtatggcggaa
gatggtaaagtagcactttatgacggtagaactggtgaaaaactaaaagagcgtgtaaat
gttgggtatatgtatattcttaaacttcaccacttagttgatgaaaaaattcacgctcgt
tcaactggaccatactctcttgttactcaacaaccggttggtggtaaagcactatttggt
ggacaaagattcggggagatggaagtttgggctcttgaagcatatggtgcttctgcagtt
cttaaagagatgcttacaatcaaatctgatgatgttgatggtcgtgtacgtgcatataaa
gcacttacaaaaggtgagtctgtaccagcttctggtatccctgagactctattcgtatta
acaaaagagcttcaagcactagctcttgatgtagatattatggacgaggtagaagataat
gagtaa
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