Sulfurimonas marina: FJR03_01395
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Entry
FJR03_01395 CDS
T08627
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smax
Sulfurimonas marina
Pathway
smax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FJR03_01395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smax03021
]
FJR03_01395 (rpoC)
03400 DNA repair and recombination proteins [BR:
smax03400
]
FJR03_01395 (rpoC)
Enzymes [BR:
smax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FJR03_01395 (rpoC)
Transcription machinery [BR:
smax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FJR03_01395 (rpoC)
DNA repair and recombination proteins [BR:
smax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FJR03_01395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF2590
Motif
Other DBs
NCBI-ProteinID:
QOP40464
UniProt:
A0A7M3V9N1
LinkDB
All DBs
Position
255423..259943
Genome browser
AA seq
1506 aa
AA seq
DB search
MSKLVPVEVTEDSRPQDIKQLQFRLASPEKVLSWSNGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTSTKVRRTRMGHIELVTPVAHIWYVSS
LPSRIGTLLGIKMKDLERVLYYEAYIVEEGGEAYYDAEAKTPVAKYDVLNEEQYRTLVQR
FGELGFKARMGGEVVRDLLDSIDLVEVFNQLREEIEETRSEAKKKTINKRLKVIESFLNS
GNNPAWMMLTVLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNQRLKRLVELEAPEI
IVRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPDLRMDQCGLPKKMALELFKPHLIAKLEDKGYATTVKAAKKMIEDKTNEVWE
CLAEIVDGYPIMLNRAPTLHKLSIQAFHPRLIDGKAIQLHPLVCAAFNADFDGDQMAVHV
PLSSEAIAEAKVLMLASMNVLLPASGKAIATPSQDMVLGIYYLSLEKNGVKGSNKLFANV
DEINIALENKALDIHAKVRTRVDGRIIHTTAGRLLIKAILPDFVPAELWNKTMKKKAINE
MVDYVQKHGGIGVTASFLDRLKDLGFKHATEAGVSISADDIRVPDMKEGKINESKNRVIE
IQKQFEAGLLTEQERYNKIIDVWTDTNNTLAAEMMELVQNDKDGFNSIHMMADSGARGSA
AQIRQLAGMRGLMAKPSGDIIETPIISNFKEGLNVIEYFISTHGARKGLADTALKTANAG
YLTRKLVDVAQNVKIVEHDCHTHEGIEITDISDQNTLIESLEDRLNGRVLADDVIDPISN
EILFAEGTLLDEESAKVIAEAGIKSAHIRTPTTCKSEEGICALCYGVNLATGHIVRPGEA
VGIVAAQSIGEPGTQLTLRTFHVGGTASSTAQERQVVAEKEGFIRYYNLKTYQNKEGKNI
VANRRNAAVLLVEPKIKAPFSGKVEIQTIHDEVLVSITGKDETVRYALRKNEIAKPNELA
GVSGQIEGKYYFPYANGTEVEAEDSIVETIKDGWNVPSRVPYASELLVDNGAPVTQKIYA
KEQGTVKYFLLKGDYLERFEGLKSGYEVKEKGLFAAVIDENNREAVRHYIARGSVIVTED
DEVVESTSLIAKPASDESVVIAEWDPYSNPIISEASGKVKYEDIIVGTTATEQLDELTGK
TRLMINDHISSEYKPTIVLATEDGELLRYAIEPKSSLFVKDGQEVKIADIIAKTPKALQK
SSDITGGLPRVSELFEGRRPKATALISEIDGTVSFGKPLRGKVRIIVSNSENGIVKEYFV
DKSHEAVVNAGDFVHAGERLTTGILSSHELLRIMGVKALYNYLVSEVQQVYRSQGVNIAD
KHIEVIFTQMLRQVKILKSGDTKFIEGDLVSKAKFAQENEKIIRLGGRPAIAEPFLVGIT
RAAVSADSIISAASFQDTTKVLTEAAVSAKVDNLDNLKENVIIGRTIPVGTGIYKDKTVT
FESSEE
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattagtaccagttgaagtaacagaagatagcagaccacaggatattaaacag
cttcagtttagactagcgtcacctgaaaaagttttatcttggtcaaacggtgaagttaaa
aaacctgaaactattaactaccgtactttaaagcctgaacgtgacgggcttttctgtgca
aaaattttcggacctgttcgtgactacgagtgtctttgtggtaaatacaaaaagatgcgt
tacaaaggtgttgtatgtgagaaatgtggtgttgaagtaacatctacaaaagttcgtcgt
actcgtatggggcatatcgagcttgtaactcctgttgcacacatttggtatgtatcttca
ttaccatctcgtatcggtacacttcttggtatcaaaatgaaagatttagagcgtgtactt
tactacgaagcatacattgtagaagagggtggtgaagcatactatgatgctgaagcaaaa
actcctgttgctaaatatgatgtattaaatgaagaacaataccgtacattagttcaaaga
ttcggtgaattaggtttcaaagctcgtatgggtggtgaagttgttcgcgatctattagac
tctattgatcttgttgaagtatttaaccaattaagagaagagatcgaagagactcgttca
gaagctaagaaaaaaacaatcaacaaacgtttaaaagttattgagtctttcttaaactct
ggaaataatccagcatggatgatgttaactgtattaccggttcttccaccagatttacgt
ccacttgtatcacttgatggtggtaaatttgcagtatctgatgttaatgatctttatcgc
cgtgttatcaacagaaatcaacgtttaaaacgtttagttgaacttgaagctccggaaatt
attgttagaaatgaaaagcgtatgcttcaagagtctgttgatgcactttttgacaatggt
cgtcgtgcaaatgctgttaaaggtgcaaacaaacgtccacttaaatctttaagtgaaatc
attaaaggtaaacaaggtcgtttccgtcaaaaccttcttggtaagcgtgttgacttctct
ggacgttctgtaatcgttgttggaccggaccttagaatggatcaatgtggtttacctaag
aaaatggctcttgagctgttcaagccgcatctaatcgctaaattagaagataaagggtat
gcaactacagtaaaagctgctaagaaaatgatcgaagacaaaacaaacgaagtttgggaa
tgtcttgctgaaatcgttgatggttatccaattatgcttaaccgtgcaccgacacttcac
aaactatcgatccaagcattccacccaagactaattgatggaaaagctattcagcttcac
ccattagtttgtgctgcgtttaatgccgacttcgatggtgaccagatggctgttcatgta
cctttaagttcagaagctattgctgaagcaaaagttcttatgcttgcatctatgaacgtt
cttcttccggcttctggtaaagcgatcgctacaccttcacaagatatggtccttggtatc
tactacctatctttagagaaaaatggtgtaaaaggttctaataaactatttgctaacgtt
gatgaaattaacattgcattagagaacaaagcgcttgatattcatgcaaaagttagaact
cgtgttgatggaagaattatccatacaactgccggtcgccttttaattaaagcaatcctt
ccagattttgttcctgctgaattatggaataaaactatgaagaaaaaagctatcaatgag
atggttgactatgttcaaaagcatggtggtattggtgtaactgcatcattcttagataga
ttaaaagatctaggtttcaaacatgcgactgaggctggtgtatctatttcagctgatgat
attcgtgttccagatatgaaagaggggaaaattaacgagtctaaaaaccgtgtaattgag
atccaaaaacaatttgaagcaggtcttttaactgaacaagaaagatacaataaaattatc
gacgtttggacagatacaaataatacacttgcagcagagatgatggaactggttcaaaac
gataaagacggtttcaactctatccatatgatggctgattctggtgcgaggggttctgca
gctcagattcgtcagcttgctggtatgcgtggtcttatggctaaaccaagtggtgacatt
attgagactccgattatctcgaacttcaaagagggtctaaacgtaatcgagtactttatt
tcaactcacggtgcgcgtaaaggtcttgccgatacagcacttaaaacagcgaatgcgggt
tacttaacacgtaaacttgttgacgttgcacaaaacgtgaaaattgttgagcatgactgt
catactcacgaaggtatcgaaattacagatatctctgatcaaaatacgttaatcgagtct
ttagaagacagacttaacggtcgtgtacttgctgatgatgtaatcgacccaatctctaat
gagatcctttttgcagagggtacattacttgacgaagagagtgcaaaagttattgctgag
gctggaatcaagtcagctcacattagaactccgacaacatgtaaaagtgaagagggtatc
tgtgcactatgttacggtgttaaccttgcaactggtcacattgtacgtcctggtgaggct
gttggtattgtagctgctcaatcaattggtgagccgggtacacagcttacacttcgtaca
ttccacgttgggggtactgcgagttcaactgctcaagagcgtcaagttgtagctgaaaaa
gaaggttttatccgttattataaccttaaaacgtaccaaaacaaagagggtaaaaacata
gtagctaaccgtcgtaatgcggctgtattacttgttgagccaaaaattaaagcacctttc
tctggaaaagttgaaattcaaactatccacgatgaagtattagtaagcattacaggtaaa
gatgaaactgttcgttacgcacttcgtaaaaatgagatcgctaagcctaatgagcttgct
ggtgtaagcggtcaaattgaaggaaagtactacttcccatatgcaaatggaacagaagta
gaagcagaagattctatcgttgaaactattaaagacggatggaacgtaccatcacgtgta
ccatacgcatctgaattattagttgataacggtgcacctgttacacaaaaaatctatgct
aaagagcaaggaactgttaagtacttcctacttaaaggtgactatttagaaagatttgaa
ggtcttaaatctggttacgaagtaaaagagaaaggtctttttgcagctgtaattgatgag
aacaaccgtgaggctgtacgtcactacatcgcacgtggttcagttatcgttacagaagat
gatgaagtagttgaatcaactagtcttatcgctaaacctgcatctgatgaatcagttgta
attgcagaatgggatccatattcaaatcctattatctctgaagcaagcggtaaagtgaaa
tatgaagatatcattgttggtactacagcaactgagcaacttgatgagctaactggtaaa
actcgtctaatgattaatgatcacatctcatctgagtacaagccgacaatcgtgttagct
actgaagatggtgagttattacgttatgcaattgagcctaaatcttctttattcgttaaa
gatggtcaagaggtaaaaattgctgatatcattgcgaaaacaccaaaagcacttcaaaag
tcatcggatattacagggggtcttccacgtgtatctgaactatttgaaggtcgtcgtcct
aaagctactgcacttatctctgagatagatggtacagtaagttttggtaaaccgttacgt
ggtaaagtgcgtatcattgtaagcaactctgaaaacggtattgtaaaagagtactttgta
gataaatcacacgaagcagttgttaatgcaggtgactttgttcacgctggtgagcgttta
actactggtatcttgtcttcacacgagttattaagaattatgggtgttaaagcactttat
aattacctcgtatctgaagtacaacaagtttaccgttctcaaggggttaatatcgctgat
aaacatattgaggttatcttcactcagatgttaagacaagttaagatcttaaaatctgga
gatacgaagtttatcgaaggtgatttagtttctaaagcaaaatttgctcaagagaatgaa
aaaattatccgtcttggtggtcgtcctgcgattgctgagccattccttgttggtatcaca
cgtgctgcagtatctgctgattctattatctcagctgcatcattccaagatacaactaaa
gtattaactgaagctgctgtaagtgctaaagttgataacttagacaacttaaaagaaaac
gttattattggtagaactatccctgttggtacaggtatctacaaagataaaacagtaact
tttgaatcttcagaagagtag
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integrated database retrieval system
