Sulfurimonas marina: FJR03_07205
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Entry
FJR03_07205 CDS
T08627
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smax
Sulfurimonas marina
Pathway
smax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJR03_07205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smax03019
]
FJR03_07205
Enzymes [BR:
smax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJR03_07205
Messenger RNA biogenesis [BR:
smax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJR03_07205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QOP41543
UniProt:
A0A7M1AVR9
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All DBs
Position
1415573..1416847
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AA seq
424 aa
AA seq
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MTFKELGLSAPLLKAIKEQGYTKATPIQEKAIPVVLEKKDILAGAQTGTGKTAGFTLPLL
ELLSRAKPTKHKHEVRALILTPTRELAAQVGESVSLYGKHLPFKSTVIFGGVKINPQITQ
LKKGVDIVVATPGRLLDHISQGTIKLSKVDFFILDEADRMLDMGFINDIKKIMKLLPKER
QNLLFSATYSDAIKKLSESLLKSPTLIEVARRNTSSEIVKQAVYHVDKARKRELLTHLIT
EGDWKQVLVFTRTKHGANKLCGQLEKDGISAVAIHGNKSQNARTKALADFKKGDVRVLVA
TDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGNEGEAVSLVCVDEDEFLKNIE
KLIKKDIPKVWLKGFKPDPSIKAEPINMGGGRGSRNNSQKKAKPAQNKPRSNRSNSRNRS
RSRS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
ttgacatttaaagaactgggtctatcagcacctttattaaaagcgataaaagaacaaggc
tatacaaaagctacaccgatacaggaaaaagctatacctgtagtattagagaaaaaagat
atattagcaggtgcccaaacgggtacaggtaaaacagcggggtttacactccctttactc
gaactcctttcccgtgcaaaaccaacaaaacataagcacgaggtacgtgcacttatactg
actcccacacgtgaattggctgcacaagttggcgagagtgtgtctctttacggcaaacat
ctcccatttaaatctacagtaatatttggaggggtaaagataaaccctcagatcacacaa
ttgaaaaaaggggtagatattgttgtagctactccgggaagactcttagaccatatttct
caggggacgatcaaactttcaaaagttgactttttcatccttgatgaagcggatagaatg
ttagatatggggtttatcaacgacataaaaaaaatcatgaaactcctgccaaaagagaga
caaaacctactcttttcggcaacttactcagatgctataaaaaaactttcagagagcttg
ctaaagtctccaactcttatagaagtagcaagaagaaatacttcaagcgagatcgttaaa
caagctgtttatcacgttgacaaagcacgtaaacgtgagcttttaacacacctcatcact
gaaggggattggaagcaggtacttgtatttacaagaacaaaacacggagcaaataaactg
tgtggacagttggaaaaagacgggatttcagctgtggcaattcacggaaacaaaagtcaa
aatgcaagaaccaaagcactcgctgactttaaaaaaggtgatgtaagagttttagtggca
actgacatcgcagcacgcgggatcgacatcgatcagcttccccatgtagtaaactttgaa
ctgcctaatgtcagtgaagattatgtacaccgaattggacgtaccggacgtgctggaaac
gagggtgaagctgtttcactggtgtgtgtagacgaagatgaattcttgaagaacattgag
aagcttatcaaaaaagatatccctaaagtgtggttaaaaggttttaaaccagatccatct
ataaaagcagaacctataaatatgggcggagggcgcggttctcgcaacaactctcaaaag
aaagcaaaacccgcgcaaaataagcctcggtctaatcggtctaattcaagaaaccgttcc
cgttctagatcttaa
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