Shewanella mangrovisoli: K0H60_01570
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Entry
K0H60_01570 CDS
T09316
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
smay
Shewanella mangrovisoli
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smay03000
]
K0H60_01570
Transcription factors [BR:
smay03000
]
Prokaryotic type
Helix-turn-helix
Other families
K0H60_01570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_lid_14
HTH_8
HTH_30
AAA_5
AAA_2
Mg_chelatase
PAS_4
AAA_3
HTH_7
nSTAND6
HTH_50
HTH_22
PAS
AAA_7
HTH_1
YgfZ_barrel
HTH_29
MutS_III
Motif
Other DBs
NCBI-ProteinID:
QYK09416
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Position
334674..336533
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AA seq
619 aa
AA seq
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MTVKPHFPTTQAWLTDSWQRSLGAGLSEFHAGEDLRLTRSELKHKHEQYQQLIELVQSHA
LPLFNQLMAHSNSRLLLSDADGYVLKHWGVSRYSSKLADVALDIGVNWLEKYKGTNAIGT
ALTAKQAVSVVGEQHFIRQNRFMSCTACPIFSPQGEMLGVLDITSEQQRHSQQTLMLVSS
LAQQVETALLCHLPDSHYRIDFAVQPSLLNSGWQGIVIASSDGRIVGCNPMAKQLLSQAK
LGDSLEQHLGDNWARAGGFHRDSALHVQTQALALTQTKSTRTLQDKPLNQLGVRFRDPLL
ERAWQQANKVITKQIPLLVLGETGVGKEQFVKKLHAQSTRRAQPLVAVNCAALPAELVES
ELFGYQAGAFTGANRTGFIGKIRQAHGGFLFLDEIGEMPLAAQSRLLRVLQEREVVPVGS
NQSFKVDIQIIAATHMDLESLVAQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHR
RHRSSAQTLCTELLAQLMRYDWPGNLRELDNLMQVACLMAEGEAVLEINHLPDYLAQKLM
NLACESQTLTEVVEAEATAHPYELAESSSATIDSLHGTINLNVLQAYRACDGNVSQCAKR
LGISRNALYRKLKQLGIKG
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaaaaccgcattttccaaccacacaggcatggttaaccgattcatggcaacgc
agtttaggtgctggcttgtcagagtttcatgccggtgaggatctcaggctcacgcgttcg
gagctcaaacataagcatgaacaatatcagcagctcatcgaattagtacaatcccatgcc
ttaccgctatttaatcaactgatggcgcactctaatagtcgattattgctctccgatgcc
gatggttatgtgctgaaacattggggggtgagccgctattccagcaagctggctgatgtg
gcgctcgatattggggtcaactggctcgaaaagtataagggcaccaatgcaataggcacg
gcgctcacggccaagcaggcggtgtcagtggtcggcgagcagcattttatccgccaaaac
cgctttatgagttgcaccgcttgcccgattttttcaccccaaggcgagatgctcggagtg
cttgatattaccagtgagcagcaacggcattcgcagcaaaccttaatgctagtgtcgagt
ctggcgcagcaggtcgaaacggcgctgctgtgtcatctgcccgatagtcattatcgaatc
gatttcgcggtgcagccgagtctattgaattccggctggcaaggcatagttatcgccagc
agtgatgggcggattgtgggttgtaatcccatggcgaaacagctgctgagtcaggccaaa
ctgggtgacagtttagagcaacacctcggcgataattgggcgcgagcggggggctttcac
cgcgattcggcgctgcatgtgcagacgcaagcattggcactgacgcagacgaaaagtacc
agaacccttcaagataaacccttgaaccaattgggtgtcaggtttcgtgacccgttactt
gagcgtgcctggcagcaggcgaacaaggtgatcactaagcaaattcctttacttgtgctt
ggcgaaacgggtgtcggcaaagagcaatttgtgaaaaagcttcacgcccagagtacccgc
cgcgcacagcccttggtggcggtgaactgcgccgccttgcccgcagagctggttgagtct
gagttatttggttatcaggcgggggcctttactggcgccaatcgaactggttttatcggt
aagatccgtcaggcacacggcggctttttgttcctcgatgaaattggcgagatgccactg
gcggcgcagagtcgtttacttcgggtgttgcaggagcgcgaggtcgttcccgtcggcagt
aatcaaagttttaaggtcgatattcagatcatcgccgcgacccatatggacttagagtcg
ctggtggcgcaggggctgttccgtcaggatttgttttatcgcctgaatggattgcaggtg
cggctgcctgcgctgcgtgagcggcaggatattgagcgcatcatccataagttgcaccgc
cgtcaccgcagcagcgcgcaaaccttgtgtactgagctgttggcgcagctaatgcgctac
gattggcccggtaacctaagggagctggataacctaatgcaggtggcttgtttgatggcc
gaaggtgaagctgtactcgagatcaatcatctccccgattaccttgctcaaaagctaatg
aacttggcgtgtgagtcgcagaccttaactgaggttgtcgaagcagaagcaacggcacat
ccgtacgagctggctgagtctagctccgccaccatcgactcgctccacggaaccattaat
ctgaacgtgttgcaggcttaccgtgcttgcgatggcaatgtgagccaatgcgctaagcgt
ttggggattagtcgtaatgccctgtatcgtaagttaaaacagctagggattaagggttaa
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