Shewanella mangrovisoli: K0H60_02395
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Entry
K0H60_02395 CDS
T09316
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
smay
Shewanella mangrovisoli
Pathway
smay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H60_02395 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smay03019
]
K0H60_02395 (rhlB)
Enzymes [BR:
smay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H60_02395 (rhlB)
Messenger RNA biogenesis [BR:
smay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0H60_02395 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
QYK09571
LinkDB
All DBs
Position
517298..518617
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AA seq
439 aa
AA seq
DB search
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYG
GESYDVQRKTLDQGVDVLIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIR
FLFRRMPSADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
CEEYALNLPAIETYINHSIPVSNYDRDALLEDIPPPVKIHRKHPAGARNLRERSGAGRPQ
GAHRSGGRPPRHDRTRRQP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaacacatttatctaatcaaaaatttgccgaccttcctctacatccagaggtt
aaacaggcacttgccgaaaacggctttgaattttgtacgccgatccaggcgttatcatta
cccgtattacttcaatcaaaagatatcgccggccaagcccaaacgggcacgggtaagaca
atggcgtttttggttgccacatttaaccatttattgtcgacaccagtccctgagaaccgt
cagctaaatcagccgcgcgccatcattatggctcctacccgcgagctggcgattcaaatc
gccaaagacgcaattctcctagccaaacacagccacttaaaagtgggcattgtctatggc
ggtgaaagctatgatgtgcagcgcaagacgctcgatcaaggtgtagacgttctgattggt
accacaggtcgtattatcgactacgtgcgccaaggcattatcaatctcggcggcattcaa
gcggttgtgctagatgaagccgatcgcatgttcgacctcggttttatcaaggatatccgt
ttcttattccgacgtatgcccagtgccgatcagcgtctgaatatgctgttttcggcgaca
ctttcgatgaaagtgcaggaactcgcctacgatcatatgaatgatccagtaaaagtcgaa
attgcccccgaagaaaaaacctccaagaacatcaaagaagaaattttctatccttcccaa
gaagacaaaatgcgtttgctgctaacgctgattgaagaagattggccagagaaagccatt
gttttttcaaacactaagcacagctgtgaaaatttatggtcttggcttgaaggggatggc
catcgcgtcggcttgctgacgggcgatgtgccgcagaagaagcgtattcgtattcttgag
caatttacccaaggccaattggatattctggtcgcgaccgacgttgccgcgcgcgggctg
catatctctgatgtttctcacgtctacaattatgatttacctgatgattgtgaagattac
gtccaccgtattggtcgtactgggcgtgcgggtaacaaaggtgtatcggtcagttttgcc
tgtgaagaatacgctctgaatttgcctgcgattgaaacctacatcaatcactctattcct
gtgagtaattatgaccgtgatgcattgctggaagatattccgccgccggtcaaaattcat
cgcaagcaccctgcgggagcacgtaatttacgcgaacgctcaggtgcagggcgaccacaa
ggtgcccatcgtagtggtggacgtccacctcgccatgacaggacgcgtagacagccttaa
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