Shewanella mangrovisoli: K0H60_03160
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Entry
K0H60_03160 CDS
T09316
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
smay
Shewanella mangrovisoli
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smay03021
]
K0H60_03160 (rapA)
Transcription machinery [BR:
smay03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
K0H60_03160 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
ApoC-I
Motif
Other DBs
NCBI-ProteinID:
QYK09718
LinkDB
All DBs
Position
complement(704836..707742)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFALGQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFSRNEAPLTRVIYNPGDT
VESHEGWSLSVEELTEKDGLVVYHGIHSETGEKASLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGIRYQCQLLRHQLATSDLLGLQGPRVGLIPHQMWIAHEVGRRYAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERVLIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFAD
HDDPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRAYQVVEAL
SEVVPGVLLLTATPDQLGHESHFARLRLLDPDRFYDYDAFLAEENSYKDVAVAAEALAGD
GKLSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQAARSELLQELLDRHGTGRVLYR
NSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGRKTLEAKAAQALSPEKLYQEFED
NSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQKNDIQIHLPYLQDTAQERLLNWYHQGLNAFELTCPSGHVLYSEFAEDLLNVLVGGDE
DELTNLLNHTQSRYKELKHAMEQGRDKLLEINSHGGDKAKAIVERLAQSDQDTKLIGSVI
RLWDIIGVDQEDKGENSIILRPSEHMMFPTYPGLHEDGVTVTFDRDTALSRDDIALITQE
HPLVQTGLDLITGSDTGTTSVAILKNKALPAGTLFLELIYMADASAPKSSQLYRYLPPTP
IRVLLDKNGNDLSAKVDYTSFDKQLSAVNRHIGSKLVTASQPILHPLFAKGEEYAQAAVN
ELVAQAREKMTSQLTGELDRLESLKAVNPNIREEELEYLRNQMQELSTYLDASQLQLDAI
RMVLVSHV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttgccttaggacaacgttggataagtgataccgagtcagagcttggtttagga
acagtcgtacaagttgaaggccgtatggtcacagtgttattccctgcgactggtgagaac
cgcatgttctcgcgcaacgaagcccccctgacccgtgtcatatacaaccctggcgatacg
gttgaaagccatgaaggctggagcctctcggttgaagaactcaccgaaaaagacggcctc
gtcgtctaccacggtatccacagcgaaacgggcgaaaaagccagcctgcgtgagactctg
ttaaaccacaatattcgctttaacaaaccgcaggatcgcctgtttgccggtcagattgac
cgcctcgaccgtttcggcattcgttaccaatgccaattactgcgtcatcaattggcgacc
tcagatttactcggcttacaaggtccacgcgtcggtcttatcccccaccagatgtggatt
gcccatgaagtgggtcgccgttatgcaccacgtgtattgctggccgacgaagtaggttta
ggtaaaaccatcgaagcgggtctgattatccatcaacaactgctcactggccgcgccgaa
cgggtgttgattattgtgccggataccctgcgccatcagtggttagtggaaatgctgcgc
cgctttaacctgcgcttctcggtatttgatgaagaccgttgtgtcgaggcctttgccgac
catgacgatcctttctacaccgagcagttagtgatttgttcactcgaattactacgtaaa
aagaaacgtctcgaccaagcactcgatgccgattgggatctgctggtcgtcgacgaggcc
caccacttagagtggaccgaagaagctccgagccgtgcctaccaagtggttgaagcattg
agcgaagtggtgccaggggtattattgctgaccgcaacgccagatcaactcggccatgag
agccactttgcgcgcctgcgtttgctcgaccctgatcgtttctacgactacgatgccttc
ctcgccgaagaaaacagctacaaagatgtcgccgttgctgccgaagccttagcgggcgac
ggaaaattatccgatgccgccatcaacagcctgacagaattactgagcgagaaagatatc
gccccaagcattcgtttaattcaagccgaagatatcgacagcgagctgcaacaagcggcc
cgcagcgagttgctgcaagaattgctcgatcgccacggcactggccgcgtgctttatcgc
aatagccgcgcctcggttaaaggcttcccgaaacgtattttcaacgcctatccccatgca
atgccagagcagtatctcaccgctgcccgtgtgaatgagatgatgggtggccgtaagacc
ttagaagcaaaagcagcacaagccctaagccctgaaaaactctaccaagaatttgaagat
aacagcgccagttggtggaaattcgatcctcgcgtggattggttaatcgagttcttaaaa
tcgcaccgcagcaagaaagtgctgatcatcgccagtggcgccgataccgccctgagctta
gaagaagccctgcgtacccgtgaaggtattcaagccacagtcttccacgaaggcatgtcg
atcatcgagcgcgacaaggcaggtgcctacttcgcccaagaagaaggcggcgcccaagcg
ctgatctgttctgaaatcggctccgaaggtcgtaacttccagttcgccagccacttagtg
ctgttcgatctgccattgaacccagatttattagagcaacgtatcggccgtttagaccgt
atcgggcagaagaacgatatccaaattcacctgccttatctgcaagatacggcgcaggag
cgtctgctcaactggtatcaccaaggtctgaatgccttcgagctgacctgtccaagtggc
catgtgctgtacagtgaatttgccgaagatctgttgaatgttctcgtcggcggtgatgaa
gatgagctgaccaatctgctcaaccacacccaaagccgttacaaagaactgaaacacgct
atggagcaaggccgcgataagctgctggaaatcaactcccacggtggcgataaggccaag
gcgattgtcgagcgtttagcccaaagcgatcaggacactaagttgattggttcggtgatc
cgcttgtgggacattatcggtgttgatcaagaagataaaggtgaaaactctatcatcctg
cgtccaagcgaacacatgatgttcccaacctatccaggcctgcatgaggatggcgtgacg
gtcaccttcgatcgtgataccgcgctatcccgtgacgatatcgccctgatcacccaagag
cacccattagtgcaaacaggcttagatctgatcactggctctgacacaggcacgacgagc
gtcgcgattttgaaaaacaaagccttacccgcaggcaccctgttcttagaactgatttat
atggcggatgcttcggctcctaaatccagccagctatatcgttatctgccaccaacacct
atccgcgtattgctggataaaaacggtaacgatttgtcagctaaggtggattacactagc
tttgacaaacagttaagcgcggttaaccgccatattggcagcaagttagtcacagcttca
caaccgattctgcatccattatttgctaagggtgaagaatatgcccaagccgcggtgaac
gagttagtagcccaggcgcgtgagaaaatgaccagccaactgacgggcgaattagaccgt
ttagaatccttgaaagcggttaacccgaatatccgtgaggaagaattagagtacctacgt
aatcaaatgcaggagctgagcacttacctcgacgcgagtcagctacagctcgatgcgatt
cgtatggtattggtgagccatgtctaa
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