Shewanella mangrovisoli: K0H60_03680
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Entry
K0H60_03680 CDS
T09316
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
smay
Shewanella mangrovisoli
Pathway
smay02020
Two-component system
smay02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0H60_03680
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0H60_03680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smay03021
]
K0H60_03680
Transcription machinery [BR:
smay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0H60_03680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QYK09814
LinkDB
All DBs
Position
complement(831899..833374)
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AA seq
491 aa
AA seq
DB search
MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPTER
KQDIADTDFSETTAQPQEQDNSTVDIAESLTKESLPEELPMDTTWDEVFTASPNSGSGAS
REDDMPFQGETSEGLYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQSTEDILEAM
GNPEIELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFSPDTPHLENARMLIKDHLD
LIAARDFRLLMRKTKLKEDDLRESIALIQTLNPRPGLLITPVDEEYVIPDVSVSKKNGRW
VVELNPDCMPKINVNQQYAAMARSTKSQADSQFIRGHLQEAKWFIKSLESRNETLLKVAN
CIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLFELKYFFSS
HVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRTIAKYREAM
LIPPSNQRKSL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcactccagctcaaactgggtcaacagttaaccatgacgccacaacttcaa
caggccattcgtctgttgcaattgtcgtcattggaactgcagcaagagatccagcaagcc
ttagactctaatcctcttctcgagctggaagaggagcaattcgacgcgcctaccgaacgt
aagcaagatatcgccgataccgactttagcgaaacgacagctcagccacaggaacaagat
aattccaccgtagacattgccgagtcgctgaccaaagaatccctgcccgaagaactcccc
atggacaccacttgggatgaagtctttaccgcatcgccaaactcaggttctggcgctagc
cgtgaagatgacatgcccttccaaggggaaaccagtgaaggcctgtacgaacatttagaa
tggcaaaaaaacctcacgcccttctctgaaaccgatttagccatcgccaccgcgattatt
gatgccattgacgatcaaggttatctcactcaaagtactgaagatatcctcgaggccatg
ggcaatcccgagatagaactggatgaagtcgaagccgtactcaagcgcattcaacacttc
gatcccgtcggtgtcgccgcaagggatttaagcgaatgtctgcttatccaactctcccat
ttttcgccagataccccacacctcgaaaacgcccgtatgttgatcaaagatcatttagat
ctgatcgctgcccgcgactttaggttgttgatgcgtaaaaccaagcttaaggaagatgat
ctgcgcgagagcattgccctcatccaaaccttaaaccctcgccccggtttgctcatcacc
cctgtcgatgaagaatatgtcatccccgatgtgtcggtgtcgaagaaaaatggtcgctgg
gtggtcgagttaaacccggactgcatgccaaaaatcaatgtaaatcagcaatatgcagcc
atggcgcgcagcaccaaaagccaagccgatagccaatttatccgcgggcatctgcaagaa
gccaagtggtttattaaaagccttgaaagccgtaacgaaacactgctcaaggtggcaaac
tgcatagtgcaataccaacagggtttcttcgaatacggtgaagaagccatgaaacctatg
gtcctaaacgatatcgccgaggcggtagagatgcatgagtccaccatttcacgggtgacc
acacaaaaatacatgcataccccaaagggactttttgaactaaaatatttcttctcaagc
cacgtcgggactgatgatggcggtgagtgctcatccacggcaatcagagccttcattaag
aaactggttgcagcggaaaaccagaaaaaaccattaagcgacagcaagatggcgcagctt
ctggcagaacagggaattaacgttgcgcgcagaaccattgcgaagtaccgagaggcgatg
cttattcccccttccaatcagcgtaaaagtttatag
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integrated database retrieval system
