Shewanella mangrovisoli: K0H60_03805
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Entry
K0H60_03805 CDS
T09316
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smay
Shewanella mangrovisoli
Pathway
smay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H60_03805 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smay03019
]
K0H60_03805 (rnr)
03016 Transfer RNA biogenesis [BR:
smay03016
]
K0H60_03805 (rnr)
Enzymes [BR:
smay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K0H60_03805 (rnr)
Messenger RNA biogenesis [BR:
smay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K0H60_03805 (rnr)
Transfer RNA biogenesis [BR:
smay03016
]
Prokaryotic type
tRNA degradation factors
K0H60_03805 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
QYK09839
LinkDB
All DBs
Position
852423..854852
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AA seq
809 aa
AA seq
DB search
MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAT
EDRNGARQGDVVVVELTRRPGRFVKAAGKITEVLGKQMAPGMEIEIALRNYDLPHTWSAV
IEKKLRRIPDEVTEADKVGRVDLRALPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS
ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIASEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEI
LYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTSDG
GYHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLF
VRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNLDDRQI
DLVMLGDSGKGGRRKSAPSREKPMTARERVNREGAKMAKAAKSTGAKSKAGSDKAGASKS
KSKAGAKPKKSVKNSAKKPKAAKRSTRKK
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagaccctcatttcgagcgtgaacaggataagtacgaaaaccctatcccaagt
cgtgagtatattatcgagtacttacgttctcaaaaatcacctattacccgtgacagcatc
gctgttgcactgcagatccatgatgaagaacagttagaagccctgcgtcgccgtttacgg
gcgatggagcgcgacggtgaactggtatttacccgcggtcaaagctatggcttacctgaa
aaaatggatctaatttccggcacagtccttgggcacagagaaggctacggcttctttaaa
cctgacgaaggtggcgacgatttatttatctcaaatcgcgacatgctgatgtatttccat
ggcgataaagtactggcacaaaaagccggtatggaccgtaaaggccgccgcgaggcccgt
atcgtccgtttgatccaaccacgcagtgccgccattgtagggcgattccatgtcgacagt
ggcatggcatttgtgattgccgatgataagcgcattacccaagaaatcttaatcgctacc
gaagatcgcaatggcgcccgtcaaggcgatgtggtcgtggtcgaattaacccgtcgtccg
ggccgattcgtgaaagctgctggtaaaattactgaagtgctcggcaagcaaatggcaccg
ggaatggaaatcgaaattgccctgcgtaattacgatttaccccacacttggtcggctgtg
attgagaaaaaactgcgccggatccccgatgaagtgactgaagccgataaggttggccgc
gtcgatctgcgtgctctgcccttagtgaccatcgatggcgaggatgcccgtgactttgac
gatgcggtatacgccgaagttaagcctagtggtggatggcgtctgtgggtggcgattgcg
gatgtgagctactacgtgcgtaccgattcggccttagataccgaagcccgtgcccgtggt
aactcggtatacttcccatcgcaagtgatccctatgctgccggagaaaatctctaacggc
ctgtgctcgctcaatccccatgtcgaccgcctgtgtatggtcgctgagatgacgatttcg
gcacgcggtaagctgtcgggttataagttttatcctgcggtgatgcattcacatgcgcgc
ttcacttacacccaagtggctgccatgctcgaaggcggaccgattgcgtctgagcatgaa
gcgctattcccgcatcttcaatgtttgcagtcgctttatttggcgctcgatgaacagcgc
gccgagcgtggggcgattgcctttgagaccctagaaacgcagtttatttttaacgaccag
cgcaagatcgataagattgtgccaagagcgcgtaatcaagctcataaaatcattgaagaa
tgtatgattttagccaacgtgtcggctgctaagtttgtgaaaaagcacaagggtgaaatc
ctctatcgcgtgcatgagtcgccttctgagcagaaattggcaaactttaaagagtttttg
gccgaacgtggtttaagcatgggcggcggtctcgagccaacccctgcggattaccagaat
gtgatgctgcaaatcgccgataggcccgatgccgagcttatccaagtgatgttgctgcgc
tcaatgcgccaagctatctacacacctgataacgaaggccactttggtttagcactcgaa
gaatatgcgcactttacatcgccaattcgccgttatcctgacttagtgctgcaccgcgtg
atccgctatttattggcgaaggaaaaaggcgaagccaatgagaagtggacatccgatggt
ggctaccattatcaactcgatgagttagatctcttaggcgaagaatgttcgaacaccgag
cgccgtgccgatgaagccactcgcgatgtaagcgactggttgaaatgtgaatttatgcag
gaccatgtgggtgacaccttcgaggcggtgattgcctctgtcactaactttggtttattt
gttcgcttaaatgacttatttatcgatggcttagtgcatatttctagcctaggaagcgat
tattaccagttcgatcctatgcgtcagcgtttgattggtgagcatacgggtcaaatctat
caagtgggtgaccccgtcacggtaaaagtggccgcagtaaacttggatgatagacagatt
gatttagtcatgcttggcgacagcggaaaaggcggtcgccgtaagtctgcgccgagtcga
gaaaaaccgatgacagcgcgtgagcgggttaaccgtgaaggcgccaaaatggctaaggca
gctaaatcgacaggtgcgaaatcgaaagccggttcggataaagctggggcgagtaagtcc
aagtctaaagcaggcgctaagcctaagaaaagcgtaaaaaattcggcgaaaaagccaaag
gccgcgaagcggagcacgagaaagaagtaa
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