Shewanella mangrovisoli: K0H60_08970
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Entry
K0H60_08970 CDS
T09316
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
smay
Shewanella mangrovisoli
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smay03032
]
K0H60_08970 (topA)
03400 DNA repair and recombination proteins [BR:
smay03400
]
K0H60_08970 (topA)
Enzymes [BR:
smay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K0H60_08970 (topA)
DNA replication proteins [BR:
smay03032
]
Prokaryotic type
DNA Topoisomerases
K0H60_08970 (topA)
DNA repair and recombination proteins [BR:
smay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K0H60_08970 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
QYK10775
LinkDB
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Position
2020955..2023591
Genome browser
AA seq
878 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSSSDGNEKVKSAAEVKKMSP
EEKARYKKVKDHQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQIYLATDL
DREGEAIAWHLQEVIGGDPSRYQRVVFNEITKTAIQEAFSKPSALDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLNTPASE
ALRMEVVKYLDSAFEPTNEQQALAAVQALSSASFKVIAREDKATQSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVREMIGKEYGAKYLPAEP
IRYGSKEGAQEAHEAIRPSNVNVEAAALTDMERDAQRLYELIWRQFVSCQMTPAQYDATK
LTVKAGDYELKATGRILRFDGWTRVQTALKKKNEEDNTLPSVNEGDLLSLVELEPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVKVENRRFYAEKMGEIVSERLV
GSFAELMSYDFTASMEQTLDDVASGELDWKKVLDGFYADFTKQLEKAELAPEEGGMRLNQ
MVMTNIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISDSEDAET
DALRAKHRCGICGTAMDSYLIDEKRKLHVCGNNPICEGYEVEEGQFKIKGYEGPLIECDR
CGHDMELKNGRFGKYFGCTNEECKNTRKLLKNGEAAPPKEDPIYLPELKCSKSDAHFVLR
DGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPIADDEGNKAAVKFSR
KTKEQYVATEVDGKATGWSAHYVNGKWVTESTAKKAKK
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcaccggccaaagctaagactattaataaatat
cttggcaaagaattcatcgttaaatcgagcgtggggcatatccgtgacctaccaacctct
tcttcatctgacggcaatgaaaaggtgaaatccgccgccgaagtgaagaagatgtcgcca
gaagaaaaggcgcgatataaaaaggtgaaagaccaccaggcgctggtgtcgcgtatgggc
gttaaccctgaaaagggctgggcggctaaatatcaaatcctaccgggtaaagagaaagtc
gttaaagagctgcaagccttagccgattctgctgaccaaatctatctcgcaacggactta
gaccgtgaaggggaagccatcgcctggcatttgcaagaggtgattggtggcgatccttca
cggtatcaacgtgttgtttttaacgagatcaccaaaactgcgattcaagaagcctttagt
aaaccttctgctcttgataccaatatggtcaatgcccaacaggcacggcgctttttagac
cgtgtcgtcggctttatggtgtcaccactgttgtggaagaaggttgcccgtggattatct
gcaggacgagtacaatccgtggcagtgcgtcttgtggtggagcgtgaaagcgaaatcaaa
gcctttgtacccgaagagttttgggatgtgcatgcacagctgaatacgcctgcgagcgaa
gcgctgcgcatggaagtggttaagtacttagactcagcctttgagccaacaaatgagcag
caagcgttagccgccgttcaagccttatcttcagccagctttaaagtgatcgctcgcgaa
gataaagcgacccaaagtaaaccttctgctccctttattacctcgactctgcaacaagcg
gccagtactcgcttaggctttggagtgaagaaaaccatgatgatggcacagcgcttgtac
gaagcgggtcacatcacttatatgcgtaccgattcgacaaacttaagccaagaagcgtta
gacagcgtgcgtgagatgatcggcaaggagtacggcgccaagtatttacctgccgaaccg
attcgctacggctctaaggaaggcgcgcaagaggcgcacgaagcgattcgtccatcaaac
gtgaatgtcgaagcggcagcattaaccgatatggagcgtgatgcacagcgtctttatgag
ttgatctggcgtcagtttgtctcctgccagatgacacctgctcaatacgatgcgacaaag
ctcactgtgaaggcgggtgactacgaactgaaagcgacgggacgtatcctgcgctttgac
ggttggacccgtgttcaaaccgcattgaaaaagaaaaatgaagaagacaataccttgcct
tcggtgaacgaaggtgatctgttgtctctggtcgaattagagcctaagcaacactttacc
aagccgcctgccagatacagtgaagcatcattggtaaaagaattagagaagcgtggtatc
ggtcgtccttcaacctacgccaccattatttcaacgattcaagaacggggttatgtcaaa
gttgaaaaccgccgtttctatgctgaaaaaatgggcgaaattgtcagtgagcgtttagtc
ggtagttttgctgagcttatgagctacgactttaccgccagcatggaacagacccttgac
gacgtcgccagcggtgagctggattggaaaaaagtgctcgatggtttctatgccgacttc
actaaacaactagagaaggcggaattggcaccagaagaaggcggtatgcgcctcaatcaa
atggtgatgaccaatattaagtgtccgacttgcggtcgcccaatggggatccgtaccggc
acaactggggtgttcttgggttgttcgggttacgagttaccaccgaaagagcgctgcaaa
accaccatgaacctaacgccaggcatagaagcgattagcgacagtgaagatgccgaaacc
gatgcgctacgcgccaagcatcgctgtggcatttgcggtacggcgatggacagctaccta
atcgacgaaaagcgcaagctgcatgtttgcggtaataaccccatctgtgagggttacgag
gtcgaagaaggccaatttaagatcaaaggttacgaagggccattaatcgaatgtgaccgc
tgtggccatgatatggaactgaaaaacggccgttttggtaagtatttcggctgtactaac
gaggaatgtaagaatactcgtaagttactgaaaaacggtgaagctgcgccaccaaaagaa
gatcctatttatctgccagagctgaaatgcagcaagtctgatgcgcattttgtgctgcgt
gacggtgcggcggggattttcttggcagccagtactttccctaaatctcgggaaacccgg
gcgccactggttgaagagttagtgaaatatcgcgagctattgtggccaaaatatcagtat
cttgccgatgctcctatcgccgatgatgaggggaataaagcggcggttaagtttagccgt
aagaccaaagagcaatatgtggcgaccgaagttgatggtaaagcaaccggatggtcggcc
cattatgtgaatggtaaatgggtgactgaatcgacggcgaagaaagccaaaaagtaa
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