Shewanella mangrovisoli: K0H60_09605
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Entry
K0H60_09605 CDS
T09316
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
smay
Shewanella mangrovisoli
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smay03019
]
K0H60_09605 (hrpA)
Enzymes [BR:
smay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K0H60_09605 (hrpA)
Messenger RNA biogenesis [BR:
smay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0H60_09605 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
ResIII
HA2_N
PhoH
SLFN-g3_helicase
NACHT
T2SSE
TsaE
NTPase_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QYK10897
LinkDB
All DBs
Position
2181200..2185081
Genome browser
AA seq
1293 aa
AA seq
DB search
MVLNSDKHPLSSDFLKQCFQSDASRIRRRLFKLNKEADSDKKTQELAKLAEQAQAAFEKV
EQRLKARPKIQYPDNLPVSGMREEIAKAISENQVVIIAGETGSGKTTQLPKICLELGLGS
RGFIGHTQPRRLAARSVATRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAE
LTSDRYLEQYDTIIIDEAHERSLNIDFILGYLKQILKKRPDLKIIITSATIDVERFCKHF
NNAPIIEVSGRTYPVETRYRPLVQDTEADLDQIEGIFAAVDELVAEGLGDILIFMNGERE
IRDTAEQLNRRNYRDTEILPLYARLSYGEQSKVFSNHTGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNSRPA
FTDPEILRTNLASVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKGNI
VLTPLGRQLSQIPVDPRLARMVVESHQQGCLQEVLVIAAGLSIQDPRERPMDRKQASDEA
HRRFADPHSDFVSWVNLWQHLKEQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQA
VHDLKWRLNDTPANYDALHRALLSGLLSHIGFKDNNNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAELTETSKLFARCCAKIEPEWLEPLAAHLIKKNHLEPHFEAKQGSVIAFENQVLY
GLTVVHRRRVQYGPINPVEAREIFIRSALAEGQLQTKEAFFIANQKLLEDVEALEHKSRR
RDILVDEQVLMDFYEPRIPEGIYNAPKFFSWWKEARRTQPDLLDFNKSLLMQRSADHISA
LDFPDTWHKGNIRLQLSYHFDPAASDDGVSVHIPVALLNQIDDTDFDWLVAGMREEKCVA
LIKSLPKGLRRNFVPAPDYARACVQAMQPFSASLLDAMCKQLLRMSGTRVNPEDFDVTQM
PAHLQMNFKIEDDKGKLVAQGRVLDTLKAELQGVVAKAIRQVADKGIEKEALTEWSFGDL
PKQFEQRKGNYQVRAFPALIDNKDSVAIKLFDDEFEAQAAHRQGLRRLLLLNIPSPVKHL
QQALPNKAKLAMYFNPFGQVQILIDDIITAAVQQLLDEKALDVRDAAQFEQAKDWVRQEL
NPTAEQIALKVEQILTLYQGIKKRTKGKISLDIAFAMSDIQSQLDQLVFKGFVEACGWNR
LADVARYLKAIETRIDKLPVDPTRDRLHMQSITKVQEALAAQLAKVPRSQPVPAALIEAR
WMIEEYRVSCFAQALGTAYPISEKRILNHILLS
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttggttttgaactctgacaaacatccgctatcgagcgactttctcaagcagtgctttcaa
agtgatgcctcgcggatccgccgccgtttatttaagctcaataaagaagccgattctgat
aagaaaacccaagagttagccaaacttgccgagcaggcgcaagcagcgttcgaaaaggtc
gagcagcgtcttaaggcgcgcccgaaaatccaatacccagataatttgcccgtgagcggc
atgcgcgaagagatcgctaaagccataagtgaaaaccaagtggtgatcatcgcgggtgaa
accggttcgggtaaaaccactcagctcccaaaaatctgtttagaactgggccttggtagc
cgcggctttattggtcatacccagccacggcgtttagcggcgcgcagcgtggcgacacgt
gttgccgaagagttgcaaagtccgctcggcgaagtggtgggctttaaggtgcgttttgcc
gatgccttaaagagcgaatcctatatcaagctgatgaccgacgggattttactggcggag
ctcacctcggatcgctatttagagcaatacgatactatcatcatcgacgaggcgcacgag
cgcagcctcaacatcgactttatcttgggttacctcaagcaaattctgaaaaaacgcccc
gatcttaagatcatcatcacctcggcaaccatcgatgttgagcgtttttgtaagcatttc
aataatgcacctattatcgaagtctctggccggacgtatccagtggaaacccgttatcgc
ccgctagtgcaagataccgaagcggatctcgaccaaatcgaagggatttttgccgccgtc
gatgagttagtcgccgaaggcttgggcgatattctgatctttatgaacggcgagcgggaa
attcgcgataccgccgagcagttaaatcgtcgcaattaccgcgataccgagattttgccg
ttatatgcgcgcctctcctacggcgagcagtccaaggtgtttagcaaccatactgggcgt
cgcatcgtgcttgccacgaacgtggcggaaacctcgctgacagtccctggtattcgttat
gtgattgacccagggacagcgcggatcagccgttacagttatcgcactaaggtgcagcgc
ttgcccatagagcccatttcacaggccagtgccaatcagcgtcaaggccgctgcggccgt
gttggcccgggtatttgtattcgtttatacgatgaggcggattttaacagtcgtcccgca
tttaccgatcccgaaatcctgcgcacaaacttagcctcggtgattttacagatgctcgcc
atcggtcttggcgatattgcagcgttcccctttattgagccgcccgatccgcgccatatt
cgcgatggcttcttactgcttgaggaattacaagccgttaagcagcagaagggcaatatt
gtgttaacgccgcttgggcgtcagttatcgcagatcccggtggatccgcgtctggctcgt
atggtggtggagagtcatcagcagggctgtttgcaggaagtgctagtgattgcggcgggt
ctgtcgattcaagacccccgtgagcgccccatggatagaaagcaggcgtccgatgaggct
catcgccgttttgccgatccccattctgattttgtcagctgggtgaatctatggcagcac
ttaaaagagcagcaaaaggaattatccgccagccagttccgtaaaaaatgccgcgacgag
tacttagcctacctgcgtgtgcgtgaatggcaggatttatatactcagctaaaacaagcg
gttcacgatttaaagtggcgcttaaatgacactccagccaactacgatgcgctgcaccgt
gcgttgttatcgggtctgctgagtcatatcggttttaaggacaataacaacgagtactta
ggtgcgcgcaatcgtaagttttttgtgttcccaggttcaccgctggcgaaaaaaggcccg
aaatggatcatggcggcggagctcaccgaaacctctaagctgtttgcccgctgctgcgcc
aaaattgagcctgagtggctcgagccgttagcggcgcatctgattaaaaagaatcactta
gagccgcattttgaggccaaacagggcagtgtgattgcctttgaaaaccaagtgctttac
ggtttgaccgtggtgcatcgccgccgcgtgcaatacgggccgataaatcctgttgaagcg
cgggaaatctttatccgtagcgcgcttgccgaagggcaattacagaccaaagaagccttc
tttatcgctaaccaaaagctattagaggatgtcgaagcactcgagcacaagtcccgtcgc
cgcgatattttggtcgatgaacaagtgttaatggacttttacgagccgcgcattcccgaa
ggcatctataacgcgcctaagttctttagctggtggaaggaagcgcgccgtactcagccc
gatttactcgattttaataagtcactgcttatgcagcgcagtgccgatcatatctcggcg
ctcgatttccctgacacttggcataagggtaatatccgcctgcaactgagttatcacttc
gaccccgcggcgagtgatgatggcgtttctgtgcatattccagtggcgctactcaatcaa
atcgatgatacggatttcgattggctggtggcggggatgcgtgaggagaaatgcgtcgcc
ctgattaagtctttacctaaggggctgagacgtaactttgtgcctgcgcccgattatgcc
cgcgcctgcgtgcaggcgatgcagccctttagcgccagtttactcgatgccatgtgcaaa
cagcttttgcgtatgagtggtacgcgcgttaatcctgaagattttgatgtcacgcagatg
cccgcgcatttgcagatgaactttaagattgaggacgacaagggcaagttagtggctcag
gggcgggtactcgataccctaaaggccgagttacagggcgtggtcgctaaggcgattcgt
caagtggcggataaggggattgaaaaggaagcgctcaccgagtggtcctttggcgactta
ccgaaacaatttgagcagcgtaagggcaactatcaagttcgggctttccctgcactaatt
gacaataaagactcagttgctatcaaattatttgatgatgaatttgaggcgcaggcggcg
caccgtcagggtctacgtcgcttgttgttactcaatattccatcgccggtaaaacacctg
caacaggcactgcctaacaaggcaaaactggcgatgtatttcaatccatttggtcaagtg
caaattctgattgatgacatcattaccgcagccgtgcagcaattgctcgatgaaaaggcg
ctggatgtgcgcgatgctgctcagttcgagcaggccaaggattgggtgcgccaagagctg
aaccctaccgccgagcaaatcgccctaaaagtggagcaaattttgacgctctaccaaggc
attaaaaagcggaccaagggcaaaattagcttagatatcgcttttgcgatgagtgatatt
caaagtcaattagaccaattagtgttcaagggattcgtcgaagcctgtggttggaatcgc
ctagcggatgtggcgcgttacttaaaggcgattgaaacccgtatcgacaagttgcccgtg
gatccgacccgtgaccgtttgcatatgcagagtatcactaaagtgcaggaggccttagcg
gcgcagcttgctaaggtgccacgctcgcaacccgtgcctgcggcactgattgaagcccgt
tggatgattgaagaataccgcgtgtcttgctttgcacaggcgctgggaacggcttatccc
atctcggaaaagcgtattttaaaccatatcttgctgagttaa
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