Shewanella mangrovisoli: K0H60_11215
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Entry
K0H60_11215 CDS
T09316
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
smay
Shewanella mangrovisoli
Pathway
smay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0H60_11215 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smay03400
]
K0H60_11215 (recB)
Enzymes [BR:
smay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0H60_11215 (recB)
DNA repair and recombination proteins [BR:
smay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0H60_11215 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QYK07418
LinkDB
All DBs
Position
2566348..2570139
Genome browser
AA seq
1263 aa
AA seq
DB search
MTKVSPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLGEPLNCEQILVV
TFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKS
LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLPEYLA
QIIASEFGDPDGLVKQLRALLGASEVKPLQPVQPFARLAESLSQSVQRFKLAWPRGRDAL
LELLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSELKLNKG
GVLPSVSEAPLLDHMEQLAALINAIKPAFLYSAEQGISERFAKQKQQKNVLTPDDLLTTL
AAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGLDTQNSAAEPKPR
TDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRNLVAGVNHLFA
QHSDPFISQSIPFDPVKTPASAAAKQLVEHAPNSAALRLKLLSEGETGLNKASARQTLAE
DTAAEITRLLTQAANGQCRTPKGPLIAKDIAILVRDRNEAAVMKTALSKRQIGAVFLSRD
SVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQIHAFNQDEEQRQRLLEQF
FELHQIWQKRGIMPALLSLANATQMVARLLHSPVPTSIDQAEQDATAHLEASNGERRLTD
FRHLAELLQQKATEIDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGL
EYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVWDLEGTDEGWEQAKQETLAEDLR
LLYVALTRPVYLCYLYIANHSRMLKAGLKSQLHETAIGYLLGITDTDCDFSRLQNAAKAL
VAGLEASQPAISIEVVADDIEANKLHTGGSDSHTLSARKVSRQYRTPWRVGSYSGLVKNT
PHAKATPGADDEVNAVLGTDTTNSAIDPIWPDHWWQEAADLQAQPLLNRFSFERGANAGS
FMHLVLELIDFTQAQIDLPRELPKAMLQYGIAPEWQPVLEDWYLEVLQAPLALMAQDNQL
LNPELCLATLAPQHTLVEMEFYLPLNRLKDTELNQLLGQYGYDTELQFDELQGMLKGFID
LTFEYQGKFYIADYKSNHLGDNIQAYHHRALKQAIGDHRYDLQYILYSLALHRYLAMRLT
NYDYDTHIGGCYYLFLRGMSVQYPGFGIYYDKPPKALILALDALFQRSLETSTVNQQDTG
AMA
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgactaaggtatcacccgctttaccgttagatccgctcaccctgccatttggcggcagt
cgcttaatcgaggccagtgcgggcacgggtaaaacctacaccatttcaggtctgtatctg
agattactgcttggggatggcttaggcgaaccgctcaattgtgaacaaattctggtcgtg
acctttaccaatgccgccactgaggagctgagggataggattcgccgccgcattcaggta
gcctttaagtgtttcttagggcttgagattaacgatccttttgtgcaggcgctgtacgat
aagacccctgaagccgagcgcgctatcgccctgagacgcttcgacttggcgctcaaatcc
ctcgacgaagcggcgatttttaccattcacggattttgccaacggattttggccgatctc
gccttcgaatcatcattgttgttcgagtctgatttcaccttagacgacagcgagttttta
caccatgcggtgcgggacttttggcgtgaggcctgctatccgctacctgagtatttagcc
caaatcattgccagcgaatttggcgatcccgacggattagtcaagcagctaagggccttg
ctcggtgccagtgaggtcaaaccgcttcaacctgtgcagccctttgctcgtttggcagag
tccttaagccagagtgtgcagcgctttaaactcgcctggccgcgtggccgcgacgcactg
ttagagttacttcatagcctgccacttaacggccaacgttttggtaaagcgagcgacaat
taccctaaactcgcggaaatgttcgaccagctggataacttcttagcctttggtcacggc
ttaccgccgctcaaagtgctcgaagcgctgtcgttatccgagcttaagctgaataaaggc
ggcgtgctcccaagtgtgagcgaggcgccactacttgaccatatggagcagttagccgcg
ctgattaatgcgattaaacccgcatttctttacagcgccgaacaagggatcagcgagcgt
tttgccaagcaaaaacaacagaaaaatgtgctgacaccagatgatctgctcaccaccttg
gcagcggcaatgcaggccaatcccgacactttgcctaaggcagtggcgagtcgcttcccc
gtggccttaatcgatgagttccaagatacggatccactgcaatttgctattttctcaggg
atttatcaaacccgtttggggcttgatactcaaaattcggcggctgaacctaagcctcgc
acggatagcaaattaagcctgctgatgattggtgaccctaaacaggcgatttatgccttc
cgcggcgccgatatttacacttatatcgaggcgcgcagacagacccaggcgcactatttc
ctcgatactaactatcgctcgagtcgcaatctggtggccggagtaaatcatttatttgcc
cagcattcggatccttttatcagccaatcgattcccttcgatccagtaaagacgccagcc
agtgcggcggccaaacaactcgttgagcatgcgcccaatagtgccgcactgcggttaaaa
ctcttgagtgaaggcgaaactgggctcaataaggccagtgctcggcaaaccttggccgaa
gacaccgccgccgaaatcacccgtttgctgacgcaggccgccaatggtcaatgccgtacg
cccaaagggccattaattgctaaagatatcgccatcttagtgcgcgatagaaacgaagcg
gccgtgatgaaaaccgcgctgagcaagcgccagattggcgccgtctttttaagtcgcgac
agcgtatttgaaaccgtcgaagcgcgggaaatggcgctcattctgcgcgccttggccagc
cccaaggacgagcgcgccctgcgtagcgcccttgcgaccgccctgcttggttatcgcgcc
gagcaaatccatgcctttaaccaagatgaagagcagcgccaaagattgctggagcagttt
tttgagctgcaccagatctggcaaaaacgcggcattatgccagcgctgctcagcctagcc
aatgcgacccagatggttgcgcgtctactgcattctcccgttccgacaagcattgaccaa
gcggagcaagatgcaaccgctcatcttgaggcgagcaatggcgaacgtcgactcacggat
tttcgccacttagccgagctgttacagcaaaaggcgaccgaaatcgatgggatcagtgcc
ctgcttaactggtatgagcaacaactgattgataacacagggacagatgagcagcagcta
cgccttgaaagcgagcaaaacttagtgcaaatcgtcaccatccataagagcaaggggctg
gaatacccagtgtgctttgtgccctttgtcagcctcgcgcgggacaatcgccgccgcccg
acgcccatgctctaccacagaaccaatgccgatggcgcgcaggagctggtatgggattta
gaaggcacggatgaaggttgggaacaggcaaagcaggaaaccttggccgaagatctgcgt
ctgctctatgtggcgctcacccgccccgtgtatctgtgctatttgtacatcgccaaccat
agccgcatgttaaaggcaggacttaagagccagctgcatgaaaccgccataggttatctg
cttgggatcactgacactgattgtgatttttcccgtctgcaaaatgccgccaaggcgctg
gtcgcgggtctcgaggcgagtcagcctgcgatcagcattgaagtggtggccgacgacatt
gaggctaataaactgcatacggggggaagtgattctcataccttgagtgcccgtaaggtc
agccgtcagtatcgtactccatggcgcgttggcagttattctggcttagttaaaaatacg
ccccacgctaaagccactcctggcgccgatgatgaggtcaatgccgtattgggcactgat
accacaaatagcgcaattgatcccatatggccagaccactggtggcaagaagctgccgat
ctgcaagcacaacctctgctcaatcgctttagttttgagcgcggcgccaacgcgggtagt
tttatgcacttagtgcttgagttaattgattttacccaagctcaaatcgacttaccccga
gagctacctaaggccatgttgcaatacggcattgcccccgaatggcagcccgtattagag
gattggtatcttgaggtattgcaagcaccactggcattaatggcgcaggataatcagctt
ctcaatcccgagctgtgtttagccacactcgcgccgcagcacaccttagttgagatggag
ttttacctgcctctgaatcgcttaaaggatactgagcttaatcaactccttgggcaatat
ggctacgataccgagctgcagtttgacgaattacagggcatgcttaagggctttatcgac
ttaacctttgaatatcaaggcaagttttatattgccgactataagtcgaaccatctgggg
gataatattcaagcctatcatcatcgcgcgctgaaacaggcgattggcgatcataggtat
gatttgcaatatattctctactcccttgcgctgcaccgctatttagcgatgcgcttgacc
aattatgattacgatacccatatcggcggctgttattatttgtttttacggggaatgtcg
gtgcaatatcctggctttggtatttattacgataaaccgcccaaggcgcttattttggcc
ttagatgcgttgtttcagcgcagcctagagacaagcacagtgaatcaacaggatacggga
gcaatggcatga
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