Shewanella mangrovisoli: K0H60_11710
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Entry
K0H60_11710 CDS
T09316
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
smay
Shewanella mangrovisoli
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smay03016
]
K0H60_11710 (rnd)
Enzymes [BR:
smay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
K0H60_11710 (rnd)
Transfer RNA biogenesis [BR:
smay03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K0H60_11710 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QYK11103
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All DBs
Position
complement(2681154..2682263)
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AA seq
369 aa
AA seq
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MSVFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA
LPDLSAFWSLLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGHGLGYA
KLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWL
YEEGERMTEGRLATPDMDTAYLRVKNAFQLTEHQLAYLKVLAKWRLEKALARDLALGFVI
KDHGLIALAKKQPKSMGDLLKLNDLTEQEKRIHGKDILRVMQTADLSNPPELVDVLALKP
GYKSAFKNIKTCLTELCEQHAIPMEMLGSKRHIHEYLQWRWDKQQGELPTVLSGWRGQIA
AESLAKLDV
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagtgtttcagtatgtgagcgacgaagcgagccttaatgccctcgtcgctcaatat
caacagagtccactgctcgtgttagataccgagtttgtgcgcacacgtacctactacgct
aagcttgggctcattcaagcctatgatggtaaaaccttggccttaattgacccggttgcg
ctgccagatctcagtgcattctggtctttgctggataatcccaacatcatcaagctagtg
cattcctgcagcgaggacttagaagtctttgcccactatggtcagcgtcaacctacgcct
ttgttcgatagccaaatcgcagcctctttatgtggcatgggccatggtctaggttatgcc
aagttagtggaaacctgcttaggtgaagtgattgataagggtgagtcgcgcaccgactgg
atgcgccgccctttgactgaggcgcagctgagctacgccgccaacgatgtgttgtatctg
tatcaactctatccgcaacttgccgacaagcttaaagcgcaagatcgcttaggctggctg
tatgaagaaggtgagcggatgacagaagggcgcttagcaacgccggatatggatactgcg
tacctaagagtcaaaaacgcttttcagctcaccgagcatcaattggcctaccttaaagtg
ttggctaagtggcgtttagaaaaagccttagcgcgggatttagccttgggctttgtaatt
aaagatcacggcctgatcgcgctagcgaagaagcagcctaagagcatgggcgatttgctc
aaactgaacgatttgaccgagcaggagaaacgcattcacggtaaagatattttacgggtg
atgcagactgccgatttaagcaaccctcccgaattagtggatgtcttagcgcttaaacca
ggttacaaatcggcctttaagaatattaaaacctgcttaactgaactgtgcgagcagcat
gctatcccgatggagatgctgggctctaaacgtcatattcatgagtatttacaatggcgt
tgggataaacagcagggtgagttaccgacggtcttaagtggctggcgtggacaaatcgcc
gccgaatcgttggcaaagcttgacgtctag
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