Shewanella mangrovisoli: K0H60_14100
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Entry
K0H60_14100 CDS
T09316
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smay
Shewanella mangrovisoli
Pathway
smay03030
DNA replication
smay03430
Mismatch repair
smay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0H60_14100 (dnaE)
03430 Mismatch repair
K0H60_14100 (dnaE)
03440 Homologous recombination
K0H60_14100 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smay03032
]
K0H60_14100 (dnaE)
03400 DNA repair and recombination proteins [BR:
smay03400
]
K0H60_14100 (dnaE)
Enzymes [BR:
smay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0H60_14100 (dnaE)
DNA replication proteins [BR:
smay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0H60_14100 (dnaE)
DNA repair and recombination proteins [BR:
smay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0H60_14100 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF8227
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QYK07943
LinkDB
All DBs
Position
complement(3197585..3201061)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA
GIKPIIGADFWMQVPGFDGEFCALTIIAMNNDGYQNLTQIISQAYLRGHVQGRVVIDQEW
LVTYNEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRTDEER
YLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDYLVDCSKKGL
EERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGPHRASMMAT
LPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFVGGNRMTARNIIDISEARSHFAS
ALEIDLDASQLTPSVLESIEQSISPWRNGAVPVVINYSQARAKGQFRLAENWRVNPSDEL
VFALESLLGPNKVRILFP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttctctatgtccgatggt
gtggctaaggtcaaacccatcctcgcccaagttgaggcgaagggcatggccgcggtggcc
ttaacggatcaaaacaacctctgtggtctggtcaagttttatggtggctgccatggggcg
gggattaagcctattatcggcgcggacttttggatgcaagtgccggggtttgatggtgag
ttttgtgccttaaccattattgcgatgaataatgatggctatcaaaacctcactcaaatc
atcagccaagcctatttacgtggccatgttcaaggacgcgtggtgattgaccaagagtgg
ctggtcacctacaacgaaggcattttactgctgtctggcggtcgagaaggggacgtaggt
aaggcgctgcttaagggcaacaatactcaagtcgagtccttatgcgagttttatcagcag
cattttgaagggcgttattacctcgagttattgcgtacaggacgcaccgatgaagagcgt
tacctgcatatggcggtgggactggcgcaggaaaagggcatccctgtggtggccaccaat
caggtggtgtttttaaaacctgaagactttgagtcccatgagatccgtgtggcgattcac
gatggttttacgctcgccgatccccgccgtcctaaaaaatacagtgagcagcagtacctt
cgcagtgaagaggaaatgtgcgagctgtttgccgacattccggccgcgctcgaaaatacc
gttgaaattgccaagcgttgcaacgttaccatccgcttatacgaatatttcttaccgaac
ttccccaccggcgatatgtcgattgaagattatctggttgattgctctaagaaggggctt
gaagagcgtttagagttcttattccccgatccacaagtgcgcgctgagcgccgcggtgaa
tatgacgagcgtctcgatgtcgagcttaaggttatcaaccagatgggcttccccggttac
ttcctgatcgtaatggagtttatccagtggggtaaggataacggcattcccgtggggcca
ggccgtggctcgggtgcgggctcgcttgtggcctatgccctaaagattaccgacttagac
cccctcgaattcgacctgctgttcgaacgtttcttgaacccagagcgggtatctatgccc
gacttcgacgtcgacttctgtatggatagacgcgatgaggtgattgaccacgtggccgaa
ctctacggccgtgaagcggtatcgcaaatcattaccttcggtaccatggcggccaaggcg
gttatccgcgacgtgggtcgtgtgcttggccatccctatggctttgtggaccgcatttcg
aagctgattccgccagagcctggcatgacactcgccaaggcctttgaggtggagcctgcg
ctgcaggagtcctacgatgccgatgaggatgtgaaagatcttatcgacatgtgccgcaaa
ctcgagggtgtgacccgtaatgcgggtaagcacgcggggggcgtggtgatagcgcccacc
aagatcaccgacttctcgccgctttactgcgacgccgaagggaaaaacccggtaacccag
ttcgataagaacgacgtggaaaccgctggcttagtcaaattcgacttcttgggattaaga
accctcaccatcgtcgactgggcgctggagatgatcaacaaggtggaggttaaaaacggc
cgtccaccggtgcggattgaggctattcccctagacgatccagcttcgttccgcttgctg
caacgctatgaaaccactgcggtattccagctcgaatcccgtggtatgaaggatttgatt
aagcgtctgcaacccgactgcttcgaagatatgatcgcactcgtggcactgttccgccca
ggccctctgcaatcgggcatggtggataactttatcgagcgtaagcacggtcgtgaagag
gtgtcttaccccgattctcaataccagcatgaatccttgaaggagctgttgtcgcccacc
tacggcattattttgtaccaagagcaggtgatgcagattgcgcaggtgctatcgggttat
accttaggcggcgcggacatgctgcgccgtgctatgggtaagaaaaagcctgaggagatg
gccaaacagcgcggtacctttaaagaaggggcgattaagaacggcgttgacggcgagttg
gcgatgaagatcttcgacttagtggaaaagtttgcgggctacggctttaacaaatcccac
tccgccgcgtatgcgctcgtgtcctatcaaacgctgtggctcaagactcacttcccgtcg
cagtttatggcggcggtaatgtccgccgatatggacaacacagacaaaatcgtcacccta
gtggatgaatgtgagcgcatgggactcaccattattccgccggatgtgaacaaaggtctg
tttaagtttaccgtcgatgatgatctgcgtatcgtctacggcatcggcgccatcaaaggt
gtgggtgaggggccggttgaatcgatacttgaggcgcgtaaggacggtccatttaaagat
ttattcgacttttgtgcccgtatcgatcttaaaaaacttaacaagcgggtgattgaaaag
cttatctgcgctggcgccttagatgcgcttgggccgcaccgcgcctctatgatggccacc
ttgcccgaggcaataagcgctgccgatcagcatgctaaggccgaggctatcggccagcat
gatatgtttggtttgcttaatagcgaccctgaagacagcaagcagcagtttgtcgaatgt
accccgtggccggataaaatttggctcgaaggggagcgcgagaccttaggcctgtattta
accggtcacccgattaatcaatatctgaaagagcttaagcattacacctctggacgctta
aaggacgtgcatccaaccgatcgcggcaaaacggtgaaggcggcgggtcttgtggtcgca
acccgggtgatgctcactaagcgtggctcaaaaatgggtctgctgacgctagatgacaag
agtgcacgcctcgaggtgatgctctttaccgaagcctttgagaagtttaaccatctgctc
gagaaggacaggatcctgatctgcgaaggtgaagtaagcttcgatgattttgtcggtggc
aaccgcatgacggcgcgtaatattatcgatatcagcgaggcgcgcagccactttgccagc
gccttagaaatcgatttagacgcctcgcagttaacgccaagcgtgctagaaagcatcgag
cagtcaataagcccatggcgcaatggtgccgtgcccgtggtgattaactacagtcaagcc
cgggccaaaggccaatttaggttggcggaaaattggcgagtgaacccaagcgatgaattg
gtgtttgcccttgagagcctgcttgggcctaataaggtgcggatcctgttcccctaa
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