Shewanella mangrovisoli: K0H60_14725
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Entry
K0H60_14725 CDS
T09316
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smay
Shewanella mangrovisoli
Pathway
smay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H60_14725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smay03019
]
K0H60_14725
Enzymes [BR:
smay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H60_14725
Messenger RNA biogenesis [BR:
smay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0H60_14725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QYK08061
LinkDB
All DBs
Position
complement(3353835..3355235)
Genome browser
AA seq
466 aa
AA seq
DB search
MKFDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL
EQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE
QGVDILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT
MLFSATYSDAVKQLSHKMLNQPEWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNN
WRQVLVFASTKECAEHLLQELSLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDV
AARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALI
GQTLPVTVQPGYEEGTPLPARYREAPTATTKTAKWNYKSSRNTGAKGAGGNGTKGHDTKG
HGARGKGGFGGNAGFGQSSESQARARKSPAREGKYAKNKPNTQKGK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgacacactcggcttatcttcccctattttgaatgcgatagctgagtgtggc
tatcagcagctcacgcaagtgcagcagcaggtgatccccctcgcgctcgaaggaaaagac
attatggcctgcgcccaaacgggcacgggtaaaaccgcatcctttgccttacccgtactt
gagcaactgtcaaagcagccaaatgataagcctctgcttagggcattggtgatgacgccg
acccgggagctggcgattcaagtttgcgctaacattcagaaatacagtcagtttttaccc
ctgaaaaccttagccgtttatggcggcgcgaacatgaatccgcagcgtaaaggggtggag
cagggcgtcgatattctggtggcgacgccggggcgactattcgacattattggccagttc
catttagatctctcgagtgtgaccaccttagtgatcgacgaagctgaccgcatgctcgat
ttaggctttgtgcgcgacattgaaaaggtaaaacgccttatcgccactgagcatcaaacc
atgttgttttcagccacctacagcgatgcggtgaagcagctttcccataagatgctcaat
caacccgagtgggtcaatgtggccgaaaataccacggcatccacggttgagcagctggtc
tatcgagtcgataaacgccgcaaggccgaattattgtcagagcttgtcgggcgcaacaat
tggcgtcaggtgctggtatttgccagcaccaaggaatgcgccgagcatctattgcaggaa
ctcagcctcgatgggatcagtgcgggcgtgttccacggcgataaaacccaaggcgcgcgt
aatcgtgtgctcgatgattttaaagcgggcaaattgcgagtgctggtggcgaccgatgtg
gcggcgcgcggcttagatattcaagcgttgcccttagtgattaacctcgaattgccattc
cttgcggaagactatgtgcaccgtattggccgtactggccgtgcgggactttcggggcgc
gcgatatcatttgtgtctccagccgatgatgagatgttggccgagattgaggccttgatt
ggccaaaccctgccagtgacggtacaacccggttacgaggaaggcacaccgctgcctgcg
cgttaccgtgaggcgccgacggccaccactaagactgctaagtggaattacaagagcagt
cgcaatacgggggctaaaggcgcaggcggcaatggcactaaaggtcatgacacgaagggt
catggcgcgcgaggcaagggcggctttggcggtaacgccggatttggtcaatcgagcgaa
agccaggcacgggcgcgtaaatcgccagcccgtgaaggtaaatacgcaaaaaataagccg
aatactcaaaagggtaaataa
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