Shewanella mangrovisoli: K0H60_15450
Help
Entry
K0H60_15450 CDS
T09316
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
smay
Shewanella mangrovisoli
Pathway
smay02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0H60_15450 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smay03021
]
K0H60_15450 (rpoD)
Transcription machinery [BR:
smay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0H60_15450 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QYK08201
LinkDB
All DBs
Position
3526516..3528366
Genome browser
AA seq
616 aa
AA seq
DB search
MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAP
DADDMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVNPDEEDLGPTATHI
GSELSEEDLDDEDDDEDDEDEDGDGEGDDDGNKGPDPEEARERFSQLRTAYENALKIIDA
KGREHPESIQALFEIGEIFKEFRLVPKQFDRLVKSMRSMMDRVRVQERLLMKLCVEQAKM
PKKNFVKFFTGNETNLDWFDAEKNSTKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIAA
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATS
ESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEILKSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaactcaagctgttgcttgccaaaggtaaagagcaaggt
tacttaacctatgcagaagtgaacgatcacttacctgcagacatggtcgattctgaccag
atcgaagatattatccagatgataaatgacatgggtattcgggtgttcgaagaagcacct
gatgccgatgacatgatgatgtcggaagacaacacagacgaagatgcagcggaagaagcc
gcagccgcccttgccacagtagaaagtgagctaggccgcaccacagacccagtgcgtatg
tacatgcgcgaaatgggtaccgttgaactgctgacccgtgaaggcgaaatcgttatcgcc
aaacgcatcgaagaaggcatcaacacagttcaaagctctgtcgccgaatacccacaagcg
atcgccatgatccttgagcagtacgaccagtacgaagccgacgaactgcgcctgtctgat
attatctctggatttgttaacccggacgaagaagacctaggtccaaccgcgactcatatc
ggttctgaattatcggaagaagatctcgatgatgaagatgatgatgaagacgacgaagac
gaagacggtgacggcgaaggtgatgacgatggcaacaagggtcccgatcctgaagaagcg
cgtgaacgctttagccaattaagaaccgcctacgaaaacgcgcttaaaatcatcgatgcc
aaaggtcgtgaacacccagaatcgattcaagcactgtttgaaatcggcgagattttcaaa
gagttccgcctcgtacctaagcaattcgaccgcttagtgaaaagcatgcgctctatgatg
gaccgcgtgcgcgttcaagagcgtctactgatgaagctctgtgtcgaacaggccaaaatg
ccgaagaagaactttgtaaaattcttcaccggtaacgaaaccaatctagattggttcgat
gcagaaaagaactcaaccaagccttatgccgaaggcttaagaatggttgaagaagacgtt
cagcgttgccgtagcaagctggccgccatcgaagaagaaactggcttagtgattgccgcc
attaaagatatcaaccgtcgtatgtcaatcggtgaagccaaggctcgccgtgcgaagaaa
gaaatggttgaggcaaacttacgtctagtaatttctatcgcgaagaaatacaccaaccgt
ggtctgcaattcttggatcttatccaagaaggtaacatcggtctgatgaaggctgttgat
aagttcgaataccgtcgtggttacaagttctcgacctatgcgacttggtggatccgtcag
gcaatcacccgctcaatcgcggaccaagcccgtacgatccgtattccagtacatatgatc
gaaaccatcaacaagctgaaccgtatctctcgccaaatgctgcaggaaatgggtcgtgag
ccctcacctgaagaactggcagagcgtatgatgatgccggaagataagatccgtaaggta
ctgaaaatcgctaaagaacctatctccatggaaaccccaatcggtgacgatgaagattcg
catttaggtgattttatcgaggataccaccctcgaattaccactggacagcgccaccagc
gaaagcctgaagagcgccacccatgaggtattagcaggcttaacggcccgtgaagcaaaa
gtactgcgtatgcgttttggtatcgacatgaataccgaccacacgctggaagaagtgggt
aaacaatttgacgtaacccgtgagcgtatccgtcaaatcgaggcgaaagccctgcgtaaa
ctgcgccacccttcacgttcggaaatcttaaagtcgttcttagacgaatag
DBGET
integrated database retrieval system
