Shewanella mangrovisoli: K0H60_16720
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Entry
K0H60_16720 CDS
T09316
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
smay
Shewanella mangrovisoli
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smay03009
]
K0H60_16720 (srmB)
Enzymes [BR:
smay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H60_16720 (srmB)
Ribosome biogenesis [BR:
smay03009
]
Prokaryotic type
rRNA helicases
K0H60_16720 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
PhoH
AAA_11
AAA_30
Helicase_RecD
Cas3-like_C_2
7TM_GPCR_Sra
Motif
Other DBs
NCBI-ProteinID:
QYK08436
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Position
3827659..3828918
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AA seq
419 aa
AA seq
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MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL
QHLIDFPRRYSGHARILILTPTRELASQIHRYACHLATGQGLNIAIITGGVPYGPQEEAL
KDNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ
NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKEHKIALLCYLL
KQEDVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL
ATDVAARGIDIDDISHVINFDMPRSADSYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI
ERYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKAKEAAKRTSKKEAAKKASKIARKKQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagattttcagcttgaccctagcttattagagtcacttaaagccatgggg
cacctgtcgcccaccaccatccagcaagaaaccctgcctcatgccctcgagcagcgggat
attttggcgcgcgccccgacgggtacaggtaaaactgccagtttcttattgccagcactg
caacacttaatcgactttccccgtcgctattctggccatgcgcgaattttgatcctgacg
ccaacccgtgagttagccagtcaaattcaccgttatgcctgtcacttagccacaggccaa
gggctgaatatcgccattatcaccggcggtgtgccctatggtccgcaggaagaagcccta
aaagacaatatcgatattctggtcgcgacccctggccgtctgatggaatatttagataaa
ggcaaattcagcgcggaatcggtcgacatattgatcatcgacgaagccgaccgcatgctc
gatatgggtttctccgccgtggtgaaagccattgccctcgaagcccaaggtcgtaagcaa
aacatgctattttcggccaccctcgaaggcagcggcgttatccgttttgcccgcgaagta
cttaacgatcctatcgaaatagatgtcgacgcaccgcgtaaagagaaggccaagatccac
caatggatccaccttgccgacgataaagaacataagattgctctgctgtgctatctgctc
aagcaagaagatgttaaacgcgccatcgtattcgtgaagactcgcgatgtggtttctagc
ctcgaaggccaactgcttaaagccggtattccctgtgcctttatgcgtggcgacatggaa
cagaagaaacgcttccaagccttaagccgctttaccaaaggcgaagtgaatgtgttactc
gcgaccgatgtggccgcccgtggtatcgatatcgacgatatcagccatgtgattaacttc
gacatgccacgttctgccgatagttacatccaccgtattggtcgtactggccgcgcgggg
gcaaaaggaacggcaatttcattggccgaagcccacgatatgcggattgtcggtaagatt
gagcgttatatcgagcagccgcttaaacgccgcatcatcgaggaactgcgtcctaaacat
aaagaggcgcgcgtgccgaccaagaaaaaggccaaagtaaaagccaaggaagccgcgaag
cgaaccagcaaaaaagaagcagctaaaaaggccagtaaaattgcacgtaagaagcaataa
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