Shewanella mangrovisoli: K0H60_18005
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Entry
K0H60_18005 CDS
T09316
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smay
Shewanella mangrovisoli
Pathway
smay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H60_18005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smay03019
]
K0H60_18005
03009 Ribosome biogenesis [BR:
smay03009
]
K0H60_18005
Enzymes [BR:
smay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H60_18005
Messenger RNA biogenesis [BR:
smay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0H60_18005
Ribosome biogenesis [BR:
smay03009
]
Prokaryotic type
rRNA helicases
K0H60_18005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HD_4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QYK08679
LinkDB
All DBs
Position
4140245..4142104
Genome browser
AA seq
619 aa
AA seq
DB search
MSSSERTFRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR
QLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLA
AALLHQVQQERPLQLPAIQERTRDERSERGAERGERGERRSRESRPMPASLGSAEALKDN
PDLKMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMPKEV
LQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRGDRPMGERKPRSASGDKPFADR
KPRSDKPAGERRPRKPREE
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaagaactttccgtgaactcggcttgtccgagaatttgttgcgtgct
cttgacgagctaggttacgaaaacccaacgccaatccaatcagccagtatcgacccatta
atggctggcaaagatattttaggtcaggcacaaacaggtacaggtaaaactggcgccttc
gccctgcccctgctcaacaaagtgaccagccaagctgttccacaaatcttagtattagcg
ccaacccgcgaattagcggtgcaagtagcagaagctttcagcagctacgcgaaatttatg
aaaggtttccatgtactgccaatctatggcggtcagagcatgcatcagcaattaaacgcc
ctgaagcgtggcccacaagttatcgtgggtacaccgggccgtgttatggaccatatgcgc
cgtggcaccttaaagctggaaaccctgcaagcgctggttctcgacgaagccgacgaaatg
ttaaaaatgggctttatcgacgatatcgaatggattctggaacacacaccagagcagcgt
caactggcactgttctcggctactatgccagaacaaatcaagcgtgttgctaacaagcat
ttaaaagatgcgactaacatcagcatcgctgcgagccacaccacagttgactctatcgag
caacgtttcgtgcaagtgtctcagcacaacaagttagaagccttagtacgcgtattagaa
gttgaaaataccgaaggtatcatcatcttcgttcgtacccgtaactcatgcgttgaatta
gcagaaaaactcgaagcccgcggctacgcatcatcaccactgcacggtgatatgaaccag
caagcccgtgagcgcgcggttgaacagctgaaaagcggtaagttagacattctgatcgcg
accgacgttgcggcccgtggtctggacgttgagcgtatcggccacgtagtgaactacgat
atcccttacgatactgaagcttacgtacaccgtatcggtcgtactggccgtgctggccgt
acaggtatggcgattctgttcgtcaccagccgtgaaatgcgtatgctgcgcaccatcgag
cgcgcaactaacagccgtatttcgccaatgaaagtgccaagcccagagacagttgcagag
cgtcgtctgtctcgcttaggtgagcagttagcgcaaaccatgactcaagatctggacttt
atgcgcgaagcggttgcccagttatgtcaacaactggaagtggataccgatctgctggct
gcagccctgctgcaccaagtacagcaagagcgcccactgcaattacctgcgattcaagaa
cgtactcgtgatgagcgcagtgaacgtggtgctgaacgtggcgagcgcggtgaacgtcgt
agccgtgaatcacgtccaatgccagcaagccttggtagtgctgaagcgttaaaagataac
ccagatctgaagatgtgccgttacgttatcgacgtaggtcgtgacaatggcgtgggtgtg
ggcaacatcgttggcgctattgcaaacgaagctaacatcgacagccgttacattggtgct
atccagttatacgacgcggtgactaccgttgacctgccagacggcatgccaaaagaagtg
ctgcaacacctgaagaaagtgcgcgtatgtggcaagccactgaacatccgtgaagctggc
gatcaagtatttgtagactctggccgtggcgcacgtagcgaccgtcgtccacgtggtgac
cgtccaatgggcgagcgtaaaccacgttcagcctctggtgacaagccgtttgctgaccgc
aaaccacgttcggacaagcctgcaggcgagcgtagaccacgtaaaccacgcgaagagtaa
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