KEGG   Sphingopyxis macrogoltabida 203: LH19_05065
Entry
LH19_05065        CDS       T04627                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
smaz  Sphingopyxis macrogoltabida 203
Pathway
smaz03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:smaz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LH19_05065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smaz03400]
    LH19_05065
DNA repair and recombination proteins [BR:smaz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LH19_05065
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LH19_05065
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD AAA_30 UB2H Kinesin DUF87 Microtub_bd AAA_16 DUF2963 AAA_22 SWI2_SNF2
Other DBs
NCBI-ProteinID: ALJ12232
UniProt: A0AAC8YYE0
LinkDB
Position
complement(1019464..1021650)
AA seq 728 aa
MAIQIRTSLDEIDTAADYVPHRPARPDKVEGGKRFELVSDYEPAGDQPTAISELVSTALD
GERDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQVADNREIIRKLVALQYKRNDQAFARGNFRVRGDSLEIFPSHYEDM
AWRVSFFGDEIEEITEFDPLTGKKIASLNYVRIYANSHYVTPGPTLKQATEAIRHELAER
LKELEAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFAEWDVMRPQTV
SVSATPGTWEMDRTQGVFAEQVIRPTGLIDPPVIIRPVEEQVDDLIMEAKATAANGYRTL
VTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLERIEIIRDLRLGVFDVLVGINLLREGL
DIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERAMRETDR
RREKQEAYNAEHGITPTTIKRNIGDIIAHVASKDQVTIDIGDDKPQHMVGHNLRAYIQDL
EKKMRDAAADLEFEEAGRLRDEIRRLEADELGLPADEQVAPRVGRSNEGKPGTRKGRFGK
QSKTKWGR
NT seq 2187 nt   +upstreamnt  +downstreamnt
atggcaattcagattcgtacatcgctcgatgaaatcgatacggcggcggactatgtcccg
caccgccctgcccgccccgacaaggtcgaaggcggcaaaagattcgaactggtcagcgac
tatgagccggcgggcgaccagccgaccgcgatcagcgaactggtgtcgaccgccctcgac
ggcgaacgcgaccaggtgctgctcggcgtcaccgggtcgggcaagaccttcaccatggcg
aaggtcatcgaggagctgcagcgcccggccctgatcctcgcgccgaacaagatcctcgcg
gcgcagctctatggcgagttcaagagcttctttccgaacaatgcggtcgaatatttcgtc
agctattacgactattaccagcccgaggcctatgtgccgcgctcggacacctatatcgag
aaggaaagctcggtaaacgaggcgatcgaccgcatgcgccattcggcgacgcgcgcgctg
ctcgaacgcgacgacgtgatcatcgtggcgtcggtgtcgtgcctctatggcatcggctcg
gtcgagacttactcggcgatgatcttcgacctcaaaaagggtcaggtcgccgacaatcgc
gagatcatccgcaagctcgtcgcgctccagtacaagcgcaacgatcaggcctttgcgcgc
ggcaatttccgcgtgcgcggcgacagtctcgaaatcttcccctcgcactatgaagacatg
gcgtggcgcgtcagcttcttcggcgacgagatcgaagagatcaccgagttcgacccgctg
accggcaagaagatcgccagtctcaattatgtccgcatctatgcgaacagccattatgtg
acgccggggccgacgctcaagcaggcgaccgaggcgatccgccacgaactcgccgaacgc
ctcaaggagcttgaggccgaaggccggctgctcgaagcgcagcggctcgaacagcgcacc
aatttcgacctcgaaatgatcgccgccaccggcagctgcgcggggatcgagaattacagc
cgctttctgaccggccgcctgcccggcgagccgccgccgaccttgttcgaatatctcccc
gacaacgccctgctcttcgtcgacgagagccaccagacgatcccgcagatcggcgcgatg
tcgaagggcgatcaccgccgcaagatcacgctggccgaatatggcttccgcctgccgagc
tgcatcgacaaccggccgctgcgcttcgccgaatgggacgtcatgcgcccgcagacggtc
agcgtctcggcgacgccggggacgtgggagatggaccgcacgcagggcgtcttcgccgaa
caggtgatccgcccgacggggctgatcgacccgccggtgatcatccgcccggtcgaggaa
caggtcgacgatctgatcatggaggccaaggcgacggcggcgaacggctatcgcaccctc
gtcacgacgctgaccaagcgcatggccgaggatctcaccgaattcctccacgaagcgggg
ctcaaggtccgttacatgcactcggacgtcgagacgctggagcgcatcgagatcatccgc
gacctccgcctcggggtgttcgacgtgctcgtcgggatcaacctgctgcgcgaagggctc
gacattcccgaatgcgggctcgtcgcgatcctcgacgccgacaaggaaggcttcctgcgc
agcgagacgtcgctggtgcagacgatcggccgcgccgcgcgcaacgtcgacggccgcgtc
atcctctacgccgaccgcatcaccggcagcatggaacgcgcgatgcgcgagaccgaccgc
cgccgcgaaaagcaggaggcgtataacgccgaacatggcatcaccccgacgacgatcaag
cgcaacatcggcgacatcatcgcgcatgtcgcgtcgaaggatcaggtgacgatcgacatc
ggcgacgacaagccgcagcacatggtcggccacaacctccgcgcctatatccaggacctc
gaaaagaagatgcgcgacgccgccgccgacctcgaattcgaggaagccggccgcctgcgc
gacgagatccgccgcctcgaagccgacgagctcggcctgcccgccgacgaacaggtcgcc
ccacgcgtcggccgctcgaacgaaggcaagccgggaacgcgcaaggggcggttcgggaag
cagagcaagacgaagtggggccggtaa

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