Sphingopyxis macrogoltabida 203: LH19_05065
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Entry
LH19_05065 CDS
T04627
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
smaz
Sphingopyxis macrogoltabida 203
Pathway
smaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH19_05065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smaz03400
]
LH19_05065
DNA repair and recombination proteins [BR:
smaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH19_05065
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH19_05065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
DUF87
Microtub_bd
AAA_16
DUF2963
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ALJ12232
UniProt:
A0AAC8YYE0
LinkDB
All DBs
Position
complement(1019464..1021650)
Genome browser
AA seq
728 aa
AA seq
DB search
MAIQIRTSLDEIDTAADYVPHRPARPDKVEGGKRFELVSDYEPAGDQPTAISELVSTALD
GERDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQVADNREIIRKLVALQYKRNDQAFARGNFRVRGDSLEIFPSHYEDM
AWRVSFFGDEIEEITEFDPLTGKKIASLNYVRIYANSHYVTPGPTLKQATEAIRHELAER
LKELEAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFAEWDVMRPQTV
SVSATPGTWEMDRTQGVFAEQVIRPTGLIDPPVIIRPVEEQVDDLIMEAKATAANGYRTL
VTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLERIEIIRDLRLGVFDVLVGINLLREGL
DIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERAMRETDR
RREKQEAYNAEHGITPTTIKRNIGDIIAHVASKDQVTIDIGDDKPQHMVGHNLRAYIQDL
EKKMRDAAADLEFEEAGRLRDEIRRLEADELGLPADEQVAPRVGRSNEGKPGTRKGRFGK
QSKTKWGR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcagattcgtacatcgctcgatgaaatcgatacggcggcggactatgtcccg
caccgccctgcccgccccgacaaggtcgaaggcggcaaaagattcgaactggtcagcgac
tatgagccggcgggcgaccagccgaccgcgatcagcgaactggtgtcgaccgccctcgac
ggcgaacgcgaccaggtgctgctcggcgtcaccgggtcgggcaagaccttcaccatggcg
aaggtcatcgaggagctgcagcgcccggccctgatcctcgcgccgaacaagatcctcgcg
gcgcagctctatggcgagttcaagagcttctttccgaacaatgcggtcgaatatttcgtc
agctattacgactattaccagcccgaggcctatgtgccgcgctcggacacctatatcgag
aaggaaagctcggtaaacgaggcgatcgaccgcatgcgccattcggcgacgcgcgcgctg
ctcgaacgcgacgacgtgatcatcgtggcgtcggtgtcgtgcctctatggcatcggctcg
gtcgagacttactcggcgatgatcttcgacctcaaaaagggtcaggtcgccgacaatcgc
gagatcatccgcaagctcgtcgcgctccagtacaagcgcaacgatcaggcctttgcgcgc
ggcaatttccgcgtgcgcggcgacagtctcgaaatcttcccctcgcactatgaagacatg
gcgtggcgcgtcagcttcttcggcgacgagatcgaagagatcaccgagttcgacccgctg
accggcaagaagatcgccagtctcaattatgtccgcatctatgcgaacagccattatgtg
acgccggggccgacgctcaagcaggcgaccgaggcgatccgccacgaactcgccgaacgc
ctcaaggagcttgaggccgaaggccggctgctcgaagcgcagcggctcgaacagcgcacc
aatttcgacctcgaaatgatcgccgccaccggcagctgcgcggggatcgagaattacagc
cgctttctgaccggccgcctgcccggcgagccgccgccgaccttgttcgaatatctcccc
gacaacgccctgctcttcgtcgacgagagccaccagacgatcccgcagatcggcgcgatg
tcgaagggcgatcaccgccgcaagatcacgctggccgaatatggcttccgcctgccgagc
tgcatcgacaaccggccgctgcgcttcgccgaatgggacgtcatgcgcccgcagacggtc
agcgtctcggcgacgccggggacgtgggagatggaccgcacgcagggcgtcttcgccgaa
caggtgatccgcccgacggggctgatcgacccgccggtgatcatccgcccggtcgaggaa
caggtcgacgatctgatcatggaggccaaggcgacggcggcgaacggctatcgcaccctc
gtcacgacgctgaccaagcgcatggccgaggatctcaccgaattcctccacgaagcgggg
ctcaaggtccgttacatgcactcggacgtcgagacgctggagcgcatcgagatcatccgc
gacctccgcctcggggtgttcgacgtgctcgtcgggatcaacctgctgcgcgaagggctc
gacattcccgaatgcgggctcgtcgcgatcctcgacgccgacaaggaaggcttcctgcgc
agcgagacgtcgctggtgcagacgatcggccgcgccgcgcgcaacgtcgacggccgcgtc
atcctctacgccgaccgcatcaccggcagcatggaacgcgcgatgcgcgagaccgaccgc
cgccgcgaaaagcaggaggcgtataacgccgaacatggcatcaccccgacgacgatcaag
cgcaacatcggcgacatcatcgcgcatgtcgcgtcgaaggatcaggtgacgatcgacatc
ggcgacgacaagccgcagcacatggtcggccacaacctccgcgcctatatccaggacctc
gaaaagaagatgcgcgacgccgccgccgacctcgaattcgaggaagccggccgcctgcgc
gacgagatccgccgcctcgaagccgacgagctcggcctgcccgccgacgaacaggtcgcc
ccacgcgtcggccgctcgaacgaaggcaagccgggaacgcgcaaggggcggttcgggaag
cagagcaagacgaagtggggccggtaa
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