Sphingopyxis macrogoltabida 203: LH19_13630
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Entry
LH19_13630 CDS
T04627
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smaz
Sphingopyxis macrogoltabida 203
Pathway
smaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LH19_13630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smaz03021
]
LH19_13630
03400 DNA repair and recombination proteins [BR:
smaz03400
]
LH19_13630
Enzymes [BR:
smaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LH19_13630
Transcription machinery [BR:
smaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LH19_13630
DNA repair and recombination proteins [BR:
smaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LH19_13630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ALJ13911
UniProt:
A0AAC9AUI2
LinkDB
All DBs
Position
complement(2687839..2692119)
Genome browser
AA seq
1426 aa
AA seq
DB search
MNQLTNFMNPVAKPETFDMIKIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVLEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAIRVLLENLDLEQERVDLMEELATTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEREGEPGEGMLLADMAEVHQALFT
GAVTLHTKVISRVPQTDEQGNEYLKRFETTPGRMLIGECLPKSHTVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKETVLFADAIMALGFRNAFKAGISFGKDDMIIPASKEGMVDETRALV
KDFEQQYQDGLITQQEKYNKAIDAWSQCGDKVANAMMDEIRATPKLEDGRMAPINSIYMM
AHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVIEEDCGTERGMEMRAIIQGGSTIASLGERILGRTTL
EDVADKDGNIIAPIGTLLDEATTQRIEDAEVQSVKIRSPLVCEATLGVCGKCYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNAEAISDGTIEYRDMATIV
DQRGRRLALSRSGEIAIIDSEGRERATHKLPYGAQIMHKDGEKVKKGDRIAEWDPFTMPL
ITEKQGVVKYQDLADGKTLVEQVDEATGIAQRVVIEYRSAGRAKKEDLQPRLTLLDDASG
EAARYLLAVGTMLSVEDGQEVQAGDVLARVSREASKTRDITGGLPRVAELFEARIPKDNS
VIAKISGRIEFVKDYKAKRKIAIVPEEGDPIEYLIPKSKVLEVQEGDQVKRGDALISGSP
NPHDILDVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITSGGDTTLL
PGEQLDYLEMMEYNAKLPKNGVPAEGRPVLLGITKASLQTRSFVSAASFQETTRVLTEAS
VQGKIDSLQGLKENVIVGRLIPAGTGAAMNRVRVTASSKDAALRAAMRAANPDLIAPATA
ADEHAAELAQGPEAAIGDDPLGKVQGEDFTTDDVMVEERPEGEGEE
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcttaccaacttcatgaacccggtcgcgaagcccgaaaccttcgacatgatc
aagatcggcatcgcgagccccgagcgtatccgctcgtggtcgttcggcgagatcaagaag
cccgaaacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattatgaatgcctgtgcggcaagtacaagcgtatgaaatat
aagggcatcgtctgcgaaaagtgcggtgtcgaagtgacggtgaccaaggtccgccgcgag
cgcatgggccatatcgagctcgccgcgcccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgttgctcgacatgcagctcaagcagctcgagcgcgtgctctac
ttcgaggcctatatcgttctcgagcccggcctgaccccgctcgagaagttccagctgctg
accgaagacgaactgctcgacgcgcaggacgaatatggcgaagacgccttctcggccggt
atcggggccgaggcgatccgcgttctgctcgagaatctcgatctggaacaggagcgcgtc
gacctgatggaagagcttgcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cggcttaaagtggtcgagagctttatcgaatcgggcaaccgccccgagtggatgatcctc
gaagtcgtgccggtcatcccgcccgaactgcgcccgctggtgccgctcgacggcggccgc
ttcgctacaagcgaccttaacgatctttaccgccgcgtgatcaaccgcaacaaccgtttg
aagcgcctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagctgtcgacgcgctgttcgacaacggccgccgcggccgcacgatcacgggcgcg
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccc
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccg
ttcatctacgcgcgcctcgacgccaagggtctgtcgatgaccctgaagcaggcgaagaag
tgggtcgaaaaggaacgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcac
ccggtcctgctgaaccgcgccccgacgcttcaccgcctcggcatccaggcgttcgagccg
gtgttgatcgaaggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaacgcc
gacttcgacggtgaccagatggcggtccacgtgccgctctcgctggaagcgcagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgttccgtcgcaggacatggtcctcggtctctactatctctcgctggaacgcgaaggc
gaaccgggcgagggcatgctgctcgccgacatggcggaagtgcatcaggcgctgttcacc
ggcgcggtcacgctgcacaccaaggtcatcagccgcgttccgcagaccgacgagcagggc
aacgagtatctgaagcggttcgagaccaccccgggccgcatgctgatcggcgaatgcctg
ccgaagtcgcacaccgtgcccttcgacgtcgtcaaccgccttctgaccaagaaggaaatc
ggcgacgtgatcgaccaagtctatcgccacaccggccagaaagagaccgtgctgttcgcc
gacgccatcatggcgctgggcttccgcaacgcgttcaaggccggtatctccttcggcaag
gatgacatgatcattccggcgtcgaaggaagggatggtcgacgaaacccgcgcgctggtg
aaggatttcgaacagcagtatcaggacggcctgatcacgcagcaggaaaagtacaataag
gcgatcgacgcctggtcgcagtgcggcgacaaggtcgcgaacgcgatgatggacgaaatc
cgcgcgacgccgaagctggaagacggccgcatggccccgatcaactccatctatatgatg
gcgcattcgggtgcccgtggttcgcaggcccagatgaagcagctcgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgttctcgagtatttcaactcgacccacggtgcgcgtaagggtctggccgat
acggcgctcaagacggcgaactcgggttacctgacccgccgtctcgtcgacgtgtcgcag
gactgcgtggtcatcgaggaagattgcggcaccgaacgcggtatggaaatgcgggcgatc
atccagggcggttcgacgatcgcctcgctgggcgagcgcatcctcggccgtaccactctc
gaagatgtcgccgacaaggacggtaacatcatcgcgccgatcggcactttgctcgacgaa
gcgacgacgcagcgcatcgaggacgccgaagtccagtcggtcaagatccgctcgccgctg
gtctgcgaagcgacgctgggtgtttgcggcaaatgctatggccgcgacctcgcgcgcggt
acgccggtgaacatcggtgaagcggtcggcgtcatcgccgcccagtcgatcggtgagccc
ggcacgcagctgacgatgcgtaccttccacatcggcggtgcggcgcaggttaacgagcag
tcgaacgccgaagcgatttcggacggcacgatcgaatatcgcgacatggcgacgattgtc
gaccagcgcggccgccgtctggcgctgtcgcgttcgggcgagatcgcgatcatcgacagc
gaaggccgcgaacgcgcgacccacaagctgccctatggtgcgcagatcatgcacaaggac
ggcgagaaggtgaagaagggcgaccggattgccgaatgggatccgttcaccatgccgctg
atcaccgaaaagcagggcgtcgtgaagtatcaggatcttgccgacggcaagacgctggtc
gaacaggtcgacgaagcgacgggtatcgcccaacgcgtcgtgatcgaatatcgctcggcg
ggccgcgccaagaaggaagacctgcagccgcgtctgaccttgctcgacgacgcgtcgggc
gaagccgcgcgctacctgctcgcggtcggcacgatgctgtcggttgaggacggtcaggaa
gtgcaggcgggcgacgtgctggcgcgtgtcagccgcgaagcgtcgaagacgcgcgacatc
accggcggtctgccgcgcgttgccgagctgttcgaagcgcgcattccgaaggacaacagc
gtcatcgcgaagatcagcggtcgcattgaattcgtcaaggattacaaggcgaagcgcaag
atcgcgatcgttccggaagaaggcgatccgatcgagtatctgatccccaagtcgaaggtt
ctggaagtgcaggaaggcgaccaggtcaagcgcggcgacgcgctgatttcgggctcgccc
aacccgcacgacattctcgacgtcatgggcgtcgaggcgctggccgaatatctggtcgcg
gaaatccaggaagtctatcgactgcagggcgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggtcgagatcacgtcgggcggcgacaccacgttgctg
ccgggcgaacagctcgattatctggagatgatggaatataacgccaagctgccgaagaac
ggcgtgcccgcggagggccgtccggtcctcctcggcatcaccaaggcgtcgctgcaaacc
cgcagcttcgtttcggcggcgtccttccaggaaacgacccgcgttctcaccgaagcgtcg
gtgcagggcaagatcgactcgctgcagggcctcaaggagaatgtcatcgtcggccgcctc
atcccggcgggtaccggcgctgccatgaaccgcgtccgcgtcaccgcctcgtcgaaggac
gcggcgctgcgtgccgcgatgcgcgccgcgaaccccgacctgatcgcaccggcgacggct
gccgacgagcatgccgccgaactggcgcagggccccgaagcggcgatcggcgacgatccg
ctgggcaaggtgcagggcgaggactttacgaccgacgacgtgatggtcgaagaacgtccc
gaaggcgaaggcgaggaataa
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integrated database retrieval system
