Sphingopyxis macrogoltabida 203: LH19_19670
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Entry
LH19_19670 CDS
T04627
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
smaz
Sphingopyxis macrogoltabida 203
Pathway
smaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LH19_19670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smaz03021
]
LH19_19670
03400 DNA repair and recombination proteins [BR:
smaz03400
]
LH19_19670
Enzymes [BR:
smaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LH19_19670
Transcription machinery [BR:
smaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LH19_19670
DNA repair and recombination proteins [BR:
smaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LH19_19670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF211
IDH
HHH_XRCC3_RpoA
TmoB
Motif
Other DBs
NCBI-ProteinID:
ALJ15096
UniProt:
A0A0N9UPX6
LinkDB
All DBs
Position
complement(3968323..3969381)
Genome browser
AA seq
352 aa
AA seq
DB search
MTVNIRNWQELKKPSNLEIKAGSDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMEGEGPKRLQLSATGPATVKAGDI
MVSGDIKVMNPNHVICHLDDGATLNMELVADTGKGYVPATANRPADAPIGLIPVDSLYSP
VRQVAYKVDNARIGQELDYDKLNLTVETDGTVTPEDAVAYAARILQDQLQVFVHFEEAMN
DSGMIGMAAPSTTADESDVNQLNRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaatatccggaactggcaggaattgaagaagcccagcaacctggaaatcaag
gctggcagcgacggcaagcgcaaggcgaccttcgtcgccgagccgctcgagcgcggcttc
ggcctgacgctcggcaacgcgctgcgccgcgtgctgctctcgtcgctccagggtgcggcc
atcacgtcgatcaagatcgagaacgtgctgcacgaattctcgagcctggccggcgtgcgt
gaagacgtcaccgacatcgtgctcaacgtgaagcagatcgcgctcaagatggaaggcgaa
ggcccgaagcggctgcagctttcggcgaccggtcccgcgaccgtcaaggccggcgacatc
atggtgtcgggcgacatcaaggtgatgaacccgaaccatgtcatctgccacctcgacgac
ggcgcgacgctgaacatggaactcgtcgccgacaccggcaagggctatgtccccgcgacc
gccaaccgcccggccgacgcgccgatcggcctgatcccggtcgactcgctctactcgccg
gtgcgccaggtcgcctacaaggtcgacaatgctcgcatcggtcaggagctggactatgac
aagctgaacctgaccgtcgaaaccgacggtacggtgaccccggaagacgccgtcgcttac
gccgcgcgcatccttcaggaccagcttcaggtcttcgtccacttcgaagaagcgatgaac
gacagcggcatgatcggcatggccgcgccgtcgaccaccgccgacgagtcggacgtcaac
cagctcaaccgcttccttctcaagaaggtcgacgagctcgaactgtcggtccgcagcgcc
aactgcctcaagaacgacaacatcatctacatcggcgatctggtccagaagaccgaagcc
gaaatgcttcgcaccccgaacttcggccgcaagtccctgaacgaaatcaaggaagtgctg
tcgtcgatgggcctgcgcctcggcatggacatccccggatggccgcccgagaacatcgag
gaaatggccaagaagctcgaacaggaacttctcggctga
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