Sphingopyxis macrogoltabida 203: LH19_19965
Help
Entry
LH19_19965 CDS
T04627
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smaz
Sphingopyxis macrogoltabida 203
Pathway
smaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH19_19965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smaz03019
]
LH19_19965
03016 Transfer RNA biogenesis [BR:
smaz03016
]
LH19_19965
Enzymes [BR:
smaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LH19_19965
Messenger RNA biogenesis [BR:
smaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LH19_19965
Transfer RNA biogenesis [BR:
smaz03016
]
Prokaryotic type
tRNA degradation factors
LH19_19965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
BioW
S1_TP0910
DUF3016
Motif
Other DBs
NCBI-ProteinID:
ALJ15155
UniProt:
A0AAC9AWU5
LinkDB
All DBs
Position
complement(4019918..4022236)
Genome browser
AA seq
772 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDAQVAEGDLDLVVA
ATYDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIVKLAEQAAKDPWEVAAGDDNA
AIKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKAQFTEDGLSPQDVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATATLGTK
ESEQMVDGLNGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALNQAKEGRAHILGEMNK
ALGETRSELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS
SDLDQIEAARKWISGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVSDVLAEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGPR
RDGDRGDRGPRGGGGRDRGPRRDGGDRGDRGPRRERNDGPEDQGHVPDFLKD
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgacgctcgaaacg
ggcaaggttgcccgccaggccgacggcgccgtgatggcgacgctgggcgaaacggtcgtt
ttgtgcgccgtgaccgccgcgaagtcggtgaaggacgggcaggacttcttcccgctcacc
gtccattatcaggaaaaatattcggctgccggccgcatcccgggcggcttcttcaagcgc
gaacgcggcgcgaccgaaaaggaaacgctcgtcagccgcctgatcgaccgtccgatccgc
ccgctgttccccgaaggtttctataacgaaatcaacgccatcgctcaggtgctgagctat
gacggccacaacgagcccgacatcctcgcgatggttgcggcgtcggccgcgctcaccatc
tcgggcgtgcccttcatgggcccgatcggcgctgcgcgcgtcggttatgtcgacggcgaa
tatatcctgaacccgaccgacgcgcaggttgccgaaggcgacctcgatctggtcgtcgcc
gcgacttacgatgcggtgatgatggtcgaatccgaagcaaacgagctgtcggaagaggtc
atgctcggcgccgtcctgttcgcgcacgacgcgtgcaaggaagtcgtgaaagcgatcgtc
aagctcgccgagcaggccgccaaggatccgtgggaagtcgccgccggcgacgacaatgcc
gcgatcaaggacaagctcaagaagctgatcggcaaggacatcgccgccgcctacaagctc
actgacaagtcggcgcgctcgaacgcgctgaacgaagcacgcgcgaaggcgaaggcgcag
ttcaccgaggatggcctcagcccgcaggacgtcatggccggcatcaaactgaccaagaag
ctggaagccgagatcgttcgcggcgccatcctcaaggacggcaagcgcatcgacggccgc
acgacgacccagattcgcccgatcgtcgccgaaacgcacttcctgccccgcgcccacggc
tcggcgctgttcacccgcggtgaaacgcagacgattgccacggcaacgctcggcaccaag
gaaagcgaacagatggtcgatggcctcaatggcctgtcgtaccagaacttcatgctgcac
tataacttcccgccctattcggtcggcgaagtcggccgcttcggcgccccgggccgccgc
gaagtcggccatggcaagctggcgtggcgtgcgctgcacccggtgctgccgacgaaggac
gaattcccctacacgatccgcctcaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgtcggtttgcggcggcagccttgcgatgatggacgccggcgtgccgatcaagcgc
cccgtctcgggcatcgcgatgggcctgatcctcgaaggcaaggattatgcgatcctgtcg
gacatcctgggcgacgaggatcacctcggcgacatggacttcaaggtcgccggcacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgcgggtatcacgcgcgagatcttc
gaagccgcgctgaaccaggccaaggaaggccgcgcgcacatcctcggtgaaatgaacaag
gcgctcggcgaaacccgcagcgaattgtcggcgcacgcgccgcgtatcgagacgatgcag
atcgacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtgatccgcgagatc
gtcgcgaccaccggcgccaaggtcgacatcgacgacgaaggcctgatcaagatttcgtcg
agcgacctcgaccagatcgaggcggcccgcaagtggatcagcgggatcgtcgaggaagcc
gaagtcggcaagatctatgacggcaaggtcgtcaaccttgtcgatttcggtgcgttcgtg
aatttcatgggcggcaaggacggtctcgtccacgtcagcgaaatcaagaacgaacgcgtc
gagaaggtctcggacgtcctcgccgaaggccaggaagtcaaggtcaaggtgcttgagatc
gaccagcgcggcaaggtccgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgaagag
ctggaagacacccgtccggcccgcgaaccgcgcgaaccgcgcggcgatcgtggtccgcgc
cgcgacggcgaccgcggtgaccgtggtccgcgtggcggcggtggccgcgatcgcggtccg
cgccgcgacggcggcgaccgtggcgatcgtggtccgcgccgcgagcgcaacgacggtccg
gaagatcagggccatgtgcccgatttcctgaaggactaa
DBGET
integrated database retrieval system
