Streptococcus mitis: smi_0006
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Entry
smi_0006 CDS
T01173
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smb
Streptococcus mitis
Pathway
smb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
smi_0006 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smb03400
]
smi_0006 (mfd)
Enzymes [BR:
smb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
smi_0006 (mfd)
DNA repair and recombination proteins [BR:
smb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
smi_0006 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
AAA_16
AAA_5
Motif
Other DBs
NCBI-ProteinID:
CBJ21310
UniProt:
D3H622
LinkDB
All DBs
Position
4758..8267
Genome browser
AA seq
1169 aa
AA seq
DB search
MVTLLDLFSENDQIKKWHQSLTDKKRQLILGLSTSTKALAIASSLEKEDKIVLLTSTYGE
AEGLVSDLISILGEELVYPFLVDDSPMVEFLMSSQEKIISRVEALRFLTDSSKRGILVCN
IAASRLFLPSPTGFKESIIKIVVGEEYDQNALMHQLKEIGYRKVTQVQTQGEFSLRGDIL
DIFEISQLEPYRIEFFGDEVDGIRSFEVETQLSKENKTELTIFPASDILLREKDYQRGQS
ALEKQISKTLSPILKSYLEEILSSFHQKQIHSDSRKFSSLCYEKTWTVFDYIEKDIPIFF
DDYQKLMNQYEIFERELAQYFTEELQNSKAFSEMQYFADTEQIYKKQSPVTFFSNLQKGL
GNLKFDQIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKALEDMLEEY
QIKLDSRNKSIICKESVNLIEGNLRHGFHFVDEKILVITEHEIFQKKLKRRFRRQHVSNA
ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQSGDKISIPVEQIHL
LSKYVSSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGYAFSADDE
DQHAFDDAFPYVETDDQLRSIEEIKRDMQSSQPMDRLLVGDVGFGKTEVAMRAAFKAVND
HKQVVVLVPTTVLAQQHYTNFKERFQNFAVNIDVLSRFKSKKEQTETLEKLKNGQVDILI
GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
GIRDLSVIETPPTNRYPVQTYVLEKNESVIRDAVLREMERGGQVYYLYNKVDTIDQKVSE
LQELIPEASVGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFVENA
DYMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELILQIDA
YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
DKVFVQRVERKDNKITVQFEKVTQRLFLAQDYFKALSATNLKAVIAENKGLMELVFDVQN
KKDYEILEGLLIFGESLLEIKESKKENSI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccttattagatttattctcagaaaatgatcagataaaaaaatggcatcaaagt
ttaacagataagaaaagacaactaatacttggtttatcaacgtctactaaagctcttgca
attgcaagtagtctagaaaaagaagataagattgtgttattgacgtccacttatggagaa
gcagaaggacttgttagtgatcttatctctatcttgggtgaggaacttgtttatccattt
ttggtagatgattcccctatggtcgagtttttgatgtcttcacaagaaaaaatcatctca
cgggttgaagccttacgttttttgactgattcatctaagagagggattttagtttgtaat
atcgcagcaagtcgattgtttttaccttctccgactggatttaaagaaagcattataaaa
attgtagttggtgaagaatatgaccaaaacgcacttatgcatcagttaaaggaaattggc
tatcgaaaagttacgcaagtacaaactcaaggcgaatttagtctgcgaggagatatttta
gatatttttgaaatatcccagttagaaccttaccgaattgagttttttggtgatgaagtc
gatggtattagatcatttgaagtcgaaacacaattatcgaaagaaaataagacagaactc
acaatctttccagctagcgacatacttttgagagaaaaggattatcaacgaggacagtca
gctttagaaaaacaaatttcaaaaacgttatcaccgattttgaaatcctatctagaagaa
attctttcaagttttcaccaaaaacaaatacattcagattcacggaagttttcatctttg
tgctatgaaaagacatggactgtctttgattatattgaaaaagacataccaatattcttt
gatgattatcagaaattgatgaatcagtatgaaatatttgaaagagaactagcacaatac
tttacagaagaattacagaatagtaaagcattttctgagatgcagtattttgcagataca
gagcaaatctataaaaaacagagtccggttacctttttctctaatctacaaaaagggtta
ggaaatctcaagtttgaccaaatttatcaatttaatcaatatcctatgcaggagtttttc
aatcaattttcttttctaaaagaagaaattgagagatacaaaaaaatggattacaccatt
attctgcagtctagcaattcaatgggaagtaaggcattggaggatatgttagaggaatat
cagattaaattggattctagaaataagtcaatcatttgtaaagaatctgtaaacttaatc
gagggcaatctcagacatggttttcattttgtagatgaaaaaattctggtgatcactgaa
catgagatttttcaaaagaaattaaaacgtcgttttcgaagacaacatgtttcaaatgca
gagcgcttaaaagattataatgaacttgaaaaaggggactacgttgttcaccatattcat
ggaattggtcaatacctaggaattgaaaccattgaaatcaaaggaattcaccgcgattat
gtcagtgtccaataccaaagtggagataaaatctctatcccagtagaacagattcatcta
ctgtctaaatatgtttcaagtgatgggaaagctccaaaactcaataaattaaatgatggt
cattttaaaaaagccaagcaaaaagttaagaaccaggtagaggatatagcagacgattta
attaaactctattctgagcgtagtcagttgaaaggttatgctttttcagctgatgatgag
gatcaacatgcttttgatgatgccttcccttatgttgaaacggatgatcaacttcgtagt
attgaggaaatcaaaagagatatgcagtcttctcagccaatggatcgacttttagttggg
gatgttggttttggaaagactgaagttgcaatgcgtgcagcctttaaggctgtcaatgat
cacaaacaggttgtcgttctagttcctacgacagttttagcgcaacagcactatacgaat
tttaaggaacgattccaaaattttgctgttaatattgatgtgttgagccgctttaaaagt
aaaaaagagcagactgaaacacttgaaaaattaaaaaatggtcaagttgatattttgatt
ggaacccatcgtgttttgtcaaaagatgttgtgtttgctgatttgggcttgatgattatt
gatgaggaacagcgatttggtgtcaagcataaggaaactttgaaagagttaaagaaacaa
gtggatgtcctaaccttgaccgctactccaatccctcgtaccctccatatgtctatgctg
ggaatcagagatttgtctgttattgaaactccgccgactaatcgttatccagtgcaaaca
tatgttttggaaaagaatgagagtgtcattcgtgatgctgttttgcgtgaaatggagcgt
ggaggtcaagtttactacctttacaacaaagttgacacgattgaccagaaggtttcagaa
ttacaggagttgattccagaggcttcggttggttatgttcatggtcgaatgagtgaaatc
cagttggaaaatactctactagactttattgagggacaatacgatatcttggtgacgact
accattattgagacaggggtggacattccaaatgctaatactttatttgttgaaaatgcg
gattatatgggcttgtcaaccttgtatcagttaagaggaagagttggtcgtagtaatcgt
attgcttatgcctatctcatgtatcgtccagaaaaatcaattagtgaagtctctgaaaag
agattagaagcgattaaaggatttacagaattgggatccggatttaagattgctatgcga
gatctttcgattcgtggagcagggaatctcctaggaaaatcccagtctggtttcattgat
tctgttggttttgaattgtattcgcagttattagaggaagctattgctaaacgaaacggt
aatgctaatgctaacacaagaaccaaagggaatgctgagttgattttgcaaattgatgcc
tatcttcctgatacttatatttctgatcaacgacataagattgaaatttacaagaaaatt
cgtcaaattgacaaccgtgtcaattatgaagagttacaagaggagttgatagatcgtttt
ggagaatacccagatgtagtagcctatcttttagagattggtttagtcaagtcatatttg
gacaaggtctttgttcaacgtgtggaaagaaaagataataaaattacagttcaatttgaa
aaagtcactcaacgattgtttttagctcaagattattttaaagctttatccgcaacgaac
ttaaaagcagtcatcgctgagaataaggggttaatggagcttgtatttgatgtccaaaat
aagaaagattatgaaattttagaaggtctgctgatttttggagaaagtttattagagata
aaagagtctaagaaagaaaattccatttga
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integrated database retrieval system
