Streptococcus mitis: smi_0685
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Entry
smi_0685 CDS
T01173
Symbol
exp9
Name
(GenBank) superfamily II DNA and RNA helicases ATP-dependent RNA helicase, DEAD-box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smb
Streptococcus mitis
Pathway
smb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
smi_0685 (exp9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smb03019
]
smi_0685 (exp9)
03009 Ribosome biogenesis [BR:
smb03009
]
smi_0685 (exp9)
Enzymes [BR:
smb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
smi_0685 (exp9)
Messenger RNA biogenesis [BR:
smb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
smi_0685 (exp9)
Ribosome biogenesis [BR:
smb03009
]
Prokaryotic type
rRNA helicases
smi_0685 (exp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
DUF6363
Motif
Other DBs
NCBI-ProteinID:
CBJ21934
UniProt:
D3H7U2
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All DBs
Position
633462..635027
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AA seq
521 aa
AA seq
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MKFNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPESRQTLLF
SATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPE
LAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQIIENLTKK
RMKGLKPASAEEAFQAKKQVALKKIERDFADETIRSNFEKFGKDARKLAAEFTPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKGKGGRRGDDRRDRERRGNGRRDDFK
KGSRGNERFDKEKRYRKDNKKPRNTSSEKKTGFVIRNKGDK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaataaattaaacttgtctgctgatttgctagcagagattgaaaaagctggt
tttgtagaagctagtccaatccaagaacaaactattcccttggcccttgaaggcaaggac
gtgatcggtcaagctcagactggtacaggaaaaactgcagccttcggcttgcctaccctt
gaaaaaatccgtacagaagaagcgaccattcaagccttggtcatcgctccaactcgtgaa
ctcgctgtccaaagtcaagaagaactcttccgctttggtcgcagtaagggagtcaaggtt
cgctcagtatatggtggatcaagcattgaaaaacaaattaaggctcttaaatctggtgcc
catatcgtggtgggaacacctggtcgccttttggacttgattaaacgcaaggccttgaaa
ttacaagatattggaactcttatccttgacgaagcggatgaaatgctcaacatgggcttc
cttgaagacattgaagctatcatttctcgtgttcctgaaagccgtcaaaccttacttttc
tcagcaactatgccagatgccatcaaacgtattggtgttcaatttatgaaagaaccggag
catgtcaagattgcggctaaggaattgacaacagaattggttgaccagtactatatccga
gttaaggaacaagaaaaatttgataccatgactcgtcttatggatgtggaacaaccagaa
cttgctatcgtatttggtcgtacaaaacgccgtgtggatgaattgactcgtggtctgaaa
atccgtggcttccgtgcagaaggaattcatggagacctagaccaaaacaaacgtcttcgt
gtccttcgtgactttaaaaatggcaatcttgatgttttggttgcgacagatgttgcagcg
cgtgggttggatatttcaggtgtgacccatgtctataactacgatatcccacaagatcct
gaaagttatgttcaccgtatcggtcgtacaggtcgtgctggtaagtcaggtcagtcgatt
acttttgtatcaccaaatgaaatgggctacctccaaattattgaaaacttgactaagaaa
cgcatgaaaggtctcaaacctgcaagtgcagaagaagccttccaagctaaaaaacaggta
gctcttaagaaaattgaacgtgattttgcagatgagactatccgtagtaactttgagaaa
tttggcaaggatgctcgtaagctagctgctgaatttactccagaagaattggccatgtat
atcttgagtctgactgttcaagatccggatagccttccagaagtggagattgcgcgtgaa
aaaccactgccatttaaaccatcaggtaatggcttcggtggtaaaggtaagggaggtcgt
cgtggagatgaccgtcgtgatcgcgaacgacgtggcaatggtcgccgagatgattttaaa
aaaggcagtcgtggaaacgaacgttttgataaggaaaaacgttaccgtaaggataataaa
aaaccacgcaatacttcaagcgaaaagaaaacaggctttgttattcgtaacaagggcgat
aaataa
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