Streptococcus mitis: smi_0992
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Entry
smi_0992 CDS
T01173
Symbol
rpoD
Name
(GenBank) DNA-dependent RNA Polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
smb
Streptococcus mitis
Pathway
smb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
smi_0992 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smb03021
]
smi_0992 (rpoD)
Transcription machinery [BR:
smb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
smi_0992 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DBD_HTH
DUF2316
DUF4168
Motif
Other DBs
NCBI-ProteinID:
CBJ22239
UniProt:
D3H8P4
LinkDB
All DBs
Position
951730..952839
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AA seq
369 aa
AA seq
DB search
MATKQKEVTTFDVQVAEFIRNHKQKGTATDDEINASLVLPFTLDADGIEDLLQRIQDAGI
SITDNEGNPSARVLSAEEEPELSDEDLIGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKEL
ALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKG
FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQEYGQEPTPEQIA
EKMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQL
DEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRS
KPLRDFIED
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaacaaaaagaagtaacaacatttgacgtacaagtagcagaatttatccgt
aatcataagcaaaaagggacagcaacagatgatgaaatcaatgctagtcttgtccttcct
tttaccttggatgctgatgggattgaggatctcttgcaacgaattcaggatgcaggaatt
tcgatcacagataacgaaggaaatccaagtgcgcgtgttcttagtgcagaagaagagcca
gaactcagcgatgaggacttgattgggtcaacttcggctaaggttaacgaccctgttcgt
atgtacttgaaagaaatcggggtcgttcctcttttgaccaatgaagaggaaaaagaatta
gcactagctgttgaagctggtgatatcgaagccaaacaacgtcttgcggaagccaacctt
cgtttggttgtttctattgctaaacgctatgtcggccgtggtatgcagttccttgacttg
attcaagaagggaacatgggcttgatgaaggcggttgacaagtttgactattctaaaggg
ttcaagttttcaacttacgcaacttggtggattcgtcaggctatcactcgtgctattgcg
gatcaagctcgtactatccgtatcccagttcacatggttgaaaccattaataaattggtt
cgtgaacaacgtaatctccttcaagaatatgggcaagaaccaactcctgaacaaattgcc
gagaaaatggatatgacccctgacaaggttcgtgaaatcttgaagattgcccaagaacca
gtatctcttgaaacaccaatcggtgaagaggatgatagtcaccttggggactttatcgaa
gatgaagtgattgaaaatccagtggattatacaactcgtatcgtcttgcgtgagcagttg
gatgaggtcttggatactcttacagaccgtgaagaaaacgtcttgcgcttgcggttcggg
ctagatgatggtaaaatgcgtacccttgaagatgtgggtaaagtctttaacgtgactcgc
gagcgtatccgtcagattgaagctaaagctttgagaaaactacgccaaccaagtcgcagc
aaaccgcttcgtgattttattgaagactaa
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