Streptococcus mitis: smi_1846
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Entry
smi_1846 CDS
T01173
Symbol
rpoC
Name
(GenBank) DNA-dependent RNA Polymerase, beta-prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smb
Streptococcus mitis
Pathway
smb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
smi_1846 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smb03021
]
smi_1846 (rpoC)
03400 DNA repair and recombination proteins [BR:
smb03400
]
smi_1846 (rpoC)
Enzymes [BR:
smb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
smi_1846 (rpoC)
Transcription machinery [BR:
smb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
smi_1846 (rpoC)
DNA repair and recombination proteins [BR:
smb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
smi_1846 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Dehydratase_LU
Motif
Other DBs
NCBI-ProteinID:
CBJ23086
UniProt:
D3HB36
LinkDB
All DBs
Position
complement(1907434..1911084)
Genome browser
AA seq
1216 aa
AA seq
DB search
MQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWECACGKYKRIR
YRGIVCDRCGVEVTRTKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDMSPRALEEVI
YFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGYGSFVAKMGAEAIQDLLKQVDLEKEI
AELKEELKTATGQKRVKAIRRLDVLDAFYKSGNKPEWMILNILPVIPPDLRPMLQLDGGR
FASSDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNGRRGRPITGP
GSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKP
FVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEP
VLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPV
VTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMAYRNGYVHLHSRVGIATDSLNKPW
TEEQKHKVLLTTVGKILFNDIMPEGLPYLQEPNNANLTEGVPAKYFLPLGGDIKEAISKL
ELNPPFKKKNLGNIIAEIFKRFRTTETSALLDRMKNLGYHHSTLAGLTVGIADIPVVDDK
AEIIEESHKRVEQITKQFRRGMITDDERYNAVTAEWRAAREKLEKRLIANQDPKNPIVMM
MDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMTD
TALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRSITEGKEMIESLEERLNGRYTK
KTVRHPETGEVIIGPDELITEDKAREIVNAGVEEVTIRSVFTCNTRHGVCRHCYGINLAT
GDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEIFEARNPKGE
AVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVVPFTARMRVEVGDQVARGAALTEG
SIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGDKHIEVMVRQMIRKVRVMDPGDTD
LLMGTLMDINDFTDANKDVLIAGGVPATGRPVLMGITKASLETNSFLSAASFQETTRVLT
DAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPHAINEEEYLNPPVEEEGNEETT
EVVVDTAVETVEETVE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcaccctagcttctccaagcaaagtccgttcatggtcttatggagaagtcaaa
aaacctgaaacaatcaattaccgtaccttgaaaccagaacgtgaaggactctttgatgaa
gttatctttggtcctacaaaagactgggaatgtgcttgtggtaagtacaaacgcattcgt
tacagagggattgtttgtgaccgttgtggggttgaagtaacgcgtacaaaagttcgtcgt
gagcgtatggggcacatcgagttgaaagctcctgtatctcacatctggtacttcaagggg
attccaagccgtatgggcttgacccttgatatgagccctcgtgccctcgaggaagttatc
tactttgcggcttatgtggtgattgatcctaaggatacaccacttgagcacaagtctatc
atgacagagcgcgaataccgtgagcgcttgcgtgagtatggttatggatcattcgttgcc
aagatgggtgccgaagctatccaagaccttttgaaacaagtagatcttgaaaaagaaatt
gctgaactcaaagaagagttaaaaacagctactggacaaaaacgtgtcaaagccatccgt
cgtttggatgttttggatgccttttacaaatctggaaacaaaccggaatggatgattctc
aacatccttccagttattccaccagatcttcgtccaatgttgcagttggatggtggccgt
tttgcctcatctgacttgaacgacctttaccgccgtgttatcaaccgtaacaaccgtttg
gctcgcttgcttgagttgaatgcaccaggtatcatcgttcaaaatgagaagcgtatgctt
caagaagcggttgacgctttgattgacaatggtcgtcgtggtcgtccaatcacaggacca
ggtagccgtccactgaaatcattgagtcacatgcttaaaggtaaacaaggacgcttccgt
caaaacttgctcggtaaacgtgttgacttctcaggacgttccgttatcgccgttggtcca
actcttaagatgtaccaatgtggtgtgccacgtgaaatggcgatcgagctctttaaacca
ttcgtgatgcgtgaaatcgttgcccgtgatatcgtgcaaaacgtcaaagcagctaaacgc
ttggtggaacgtggagatgagcgtatctgggatatccttgaagaagtgattaaagaacac
ccagtacttttgaaccgcgcaccgacccttcaccgtttgggtatccaagccttcgagcca
gtcttgattgatggtaaggctcttcgcttgcacccacttgtctgtgaagcctacaatgcc
gactttgacggggaccaaatggccatccacgtaccgctttcagaagaagcccaagcagaa
gctcgtatcctcatgctagctgctgagcatatcttgaatccgaaagatggtaaaccagtt
gttactccatctcaggacatggttttgggtaactactacttgactatggaagaagctggt
cgtgaaggtgaaggaatggtcttcaaggaccgtgacgaagcggttatggcttaccgtaat
ggttatgttcaccttcactcacgtgttggtatcgcaacagacagcctcaacaaaccttgg
acagaagagcaaaaacacaaggtcttgcttacaacagttggtaaaatcctcttcaacgac
atcatgccagagggtctaccatacttgcaagaaccaaacaatgccaacttgacagaaggc
gttccagctaaatacttcttgccacttggtggagatatcaaggaagctatcagcaaactt
gaactcaaccctccattcaagaagaaaaaccttggaaatatcatcgctgaaatcttcaaa
cgtttccgtacgacagaaacttctgccctacttgaccgtatgaagaacctcggttaccac
cactcaactcttgcaggattgacagtgggtattgccgatatcccagtcgttgatgacaag
gctgaaatcattgaagaatcacacaaacgtgtagaacaaatcaccaaacaattccgtcgt
ggtatgattacagacgacgagcgttacaatgccgttacagctgaatggcgtgctgcccgt
gaaaaactagagaaacgtttgattgccaaccaagatcctaagaacccaatcgttatgatg
atggactctggagcccgtggtaacatttcaaacttctcacaacttgctggtatgcgtggt
ttgatggcggctccgaatggtcgtatcatggaattgccaatcctttcaaacttccgtgaa
ggtttgtcagtactcgaaatgttcttctcaactcacggtgctcgtaaagggatgaccgat
acggccttgaagactgccgactcaggttacttgactcgtcgtctggttgacgttgcccaa
gacgtgatcattcgtgaagatgactgtggaacagaccgtggtctcttgatccgctctatc
acagaaggcaaagagatgattgagtctcttgaagaacgtctcaatggtcgttacactaag
aaaacggttcgccatccagaaactggtgaagtcatcatcggcccagatgaattgattacc
gaagacaaggcgcgtgaaatcgtcaatgctggtgtggaagaagtaactatccgctctgta
tttacatgtaacactcgtcatggtgtctgccgtcattgctacggtatcaacttggcgact
ggtgatgcggttgaagtgggtgaagcagtcggtacaatcgctgcccaatctatcggggaa
cctggtacacagcttacaatgcgtaccttccacacgggtggtgttgcctcaaataccgat
atcacgcaaggtcttcctcgtgtccaagaaatctttgaagcccgcaatcctaaaggggaa
gcagttatcacagaagtcaaaggacaagttactgcaatcgaagaagatgcttcaactcgt
actaagaaagtctttgttaagggtgaaactggcgaaggtgaatacgtcgttccatttaca
gctcgtatgcgtgttgaagttggagaccaagtagcgcgtggtgctgctcttacagaaggt
tctatccaaccaaaacgtctccttgcagtccgtgatgtcttgtcagttgaaacttatctt
ctcggtgaagtacaaaaagtttaccgtagccaaggggtagaaatcggtgacaaacacatc
gaggtaatggttcgtcaaatgatccgtaaagtccgtgtcatggatccaggtgacacagat
cttctcatgggtaccctcatggatatcaatgactttacagatgccaacaaagatgtcctt
atcgcaggtggagttccagcgacaggtcgcccagttcttatgggaattaccaaagcctca
cttgaaacaaacagtttcttgtcagcggcttccttccaggaaacaactcgtgtccttact
gacgcagctatccgtggtaagaaagaccatctccttggactcaaggaaaatgttatcatc
ggtaagatcatcccagcaggtactggtatggctcgttaccgtaaccttgaaccacatgct
atcaacgaagaagaataccttaatcctccagtagaggaagaagggaatgaagaaacaaca
gaagtagttgtggatactgccgttgaaactgtggaagaaacagtagaataa
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integrated database retrieval system
